Experiment: m.b. 1-ethyl-3-methylimidazolium lysine 0.75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0967 and Dshi_0968 are separated by 96 nucleotides Dshi_0968 and Dshi_0969 overlap by 38 nucleotides Dshi_0969 and Dshi_0970 overlap by 13 nucleotides Dshi_0970 and Dshi_0971 are separated by 11 nucleotides
Dshi_0967: Dshi_0967 - fumarylacetoacetate (FAA) hydrolase (RefSeq), at 989,049 to 989,933
_0967
Dshi_0968: Dshi_0968 - YCII-related (RefSeq), at 990,030 to 990,485
_0968
Dshi_0969: Dshi_0969 - Mannitol dehydrogenase domain (RefSeq), at 990,448 to 991,947
_0969
Dshi_0970: Dshi_0970 - short-chain dehydrogenase/reductase SDR (RefSeq), at 991,935 to 992,426
_0970
Dshi_0971: Dshi_0971 - ABC transporter related (RefSeq), at 992,438 to 993,442
_0971
Position (kb) 990
991
992 Strain fitness (log2 ratio) -2
-1
0
1 at 989.552 kb on - strand, within Dshi_0967 at 989.605 kb on + strand, within Dshi_0967 at 989.623 kb on - strand, within Dshi_0967 at 989.636 kb on + strand, within Dshi_0967 at 989.636 kb on + strand, within Dshi_0967 at 989.636 kb on + strand, within Dshi_0967 at 989.644 kb on - strand, within Dshi_0967 at 989.688 kb on + strand, within Dshi_0967 at 989.693 kb on + strand, within Dshi_0967 at 989.696 kb on - strand, within Dshi_0967 at 989.696 kb on - strand, within Dshi_0967 at 989.696 kb on - strand, within Dshi_0967 at 989.696 kb on - strand, within Dshi_0967 at 989.750 kb on - strand, within Dshi_0967 at 990.089 kb on + strand, within Dshi_0968 at 990.097 kb on - strand, within Dshi_0968 at 990.241 kb on + strand, within Dshi_0968 at 990.293 kb on + strand, within Dshi_0968 at 990.316 kb on + strand, within Dshi_0968 at 990.331 kb on + strand, within Dshi_0968 at 990.366 kb on + strand, within Dshi_0968 at 990.478 kb on + strand at 990.523 kb on + strand at 990.742 kb on + strand, within Dshi_0969 at 990.996 kb on - strand, within Dshi_0969 at 991.086 kb on - strand, within Dshi_0969 at 991.286 kb on + strand, within Dshi_0969 at 991.313 kb on - strand, within Dshi_0969 at 991.315 kb on + strand, within Dshi_0969 at 991.511 kb on + strand, within Dshi_0969 at 991.749 kb on + strand, within Dshi_0969 at 991.813 kb on + strand at 991.873 kb on + strand at 991.909 kb on + strand at 991.968 kb on + strand at 991.984 kb on + strand at 992.010 kb on - strand, within Dshi_0970 at 992.012 kb on + strand, within Dshi_0970 at 992.046 kb on - strand, within Dshi_0970 at 992.090 kb on - strand, within Dshi_0970 at 992.171 kb on + strand, within Dshi_0970 at 992.183 kb on + strand, within Dshi_0970 at 992.220 kb on - strand, within Dshi_0970 at 992.263 kb on - strand, within Dshi_0970 at 992.326 kb on - strand, within Dshi_0970 at 992.347 kb on - strand, within Dshi_0970 at 992.614 kb on + strand, within Dshi_0971 at 992.636 kb on - strand, within Dshi_0971 at 992.849 kb on - strand, within Dshi_0971 at 992.853 kb on + strand, within Dshi_0971 at 992.863 kb on + strand, within Dshi_0971 at 992.864 kb on + strand, within Dshi_0971 at 992.892 kb on - strand, within Dshi_0971 at 992.897 kb on - strand, within Dshi_0971
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium lysine 0.75 mM remove 989,552 - Dshi_0967 0.57 -0.5 989,605 + Dshi_0967 0.63 +0.3 989,623 - Dshi_0967 0.65 -0.1 989,636 + Dshi_0967 0.66 -1.4 989,636 + Dshi_0967 0.66 -0.2 989,636 + Dshi_0967 0.66 -0.8 989,644 - Dshi_0967 0.67 -0.3 989,688 + Dshi_0967 0.72 -1.8 989,693 + Dshi_0967 0.73 +0.6 989,696 - Dshi_0967 0.73 -0.7 989,696 - Dshi_0967 0.73 +0.0 989,696 - Dshi_0967 0.73 -0.2 989,696 - Dshi_0967 0.73 -1.5 989,750 - Dshi_0967 0.79 -0.1 990,089 + Dshi_0968 0.13 +0.5 990,097 - Dshi_0968 0.15 +0.0 990,241 + Dshi_0968 0.46 -0.7 990,293 + Dshi_0968 0.58 +0.5 990,316 + Dshi_0968 0.63 -0.2 990,331 + Dshi_0968 0.66 -0.4 990,366 + Dshi_0968 0.74 +0.9 990,478 + -0.5 990,523 + -0.5 990,742 + Dshi_0969 0.20 -0.9 990,996 - Dshi_0969 0.37 -1.0 991,086 - Dshi_0969 0.43 -0.9 991,286 + Dshi_0969 0.56 -0.6 991,313 - Dshi_0969 0.58 -1.3 991,315 + Dshi_0969 0.58 -1.3 991,511 + Dshi_0969 0.71 +0.6 991,749 + Dshi_0969 0.87 -0.7 991,813 + -0.9 991,873 + +0.4 991,909 + +0.1 991,968 + +0.5 991,984 + +0.7 992,010 - Dshi_0970 0.15 +0.6 992,012 + Dshi_0970 0.16 -0.8 992,046 - Dshi_0970 0.23 +0.1 992,090 - Dshi_0970 0.32 +1.0 992,171 + Dshi_0970 0.48 -0.2 992,183 + Dshi_0970 0.50 -0.6 992,220 - Dshi_0970 0.58 -0.7 992,263 - Dshi_0970 0.67 -0.5 992,326 - Dshi_0970 0.79 +0.1 992,347 - Dshi_0970 0.84 -0.3 992,614 + Dshi_0971 0.18 -2.4 992,636 - Dshi_0971 0.20 +0.8 992,849 - Dshi_0971 0.41 -0.3 992,853 + Dshi_0971 0.41 -0.1 992,863 + Dshi_0971 0.42 -0.5 992,864 + Dshi_0971 0.42 -0.3 992,892 - Dshi_0971 0.45 -0.3 992,897 - Dshi_0971 0.46 +0.1
Or see this region's nucleotide sequence