Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_220

Experiment: sodium iodide 0.125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_218 and Pf6N2E2_219 are separated by 21 nucleotidesPf6N2E2_219 and Pf6N2E2_220 are separated by 2 nucleotidesPf6N2E2_220 and Pf6N2E2_221 are separated by 112 nucleotides Pf6N2E2_218 - hypothetical protein, at 276,551 to 277,000 _218 Pf6N2E2_219 - Response regulator BaeR, at 277,022 to 277,705 _219 Pf6N2E2_220 - Sensory histidine kinase BaeS, at 277,708 to 279,126 _220 Pf6N2E2_221 - RND efflux system, membrane fusion protein CmeA, at 279,239 to 280,432 _221 Position (kb) 277 278 279 280Strain fitness (log2 ratio) -2 -1 0 1 2at 276.798 kb on + strand, within Pf6N2E2_218at 276.798 kb on + strand, within Pf6N2E2_218at 276.799 kb on - strand, within Pf6N2E2_218at 276.935 kb on + strand, within Pf6N2E2_218at 276.935 kb on + strand, within Pf6N2E2_218at 276.979 kb on + strandat 276.983 kb on + strandat 276.983 kb on + strandat 276.983 kb on + strandat 276.984 kb on - strandat 276.998 kb on + strandat 276.999 kb on - strandat 277.060 kb on - strandat 277.060 kb on - strandat 277.060 kb on - strandat 277.060 kb on - strandat 277.060 kb on - strandat 277.167 kb on + strand, within Pf6N2E2_219at 277.167 kb on + strand, within Pf6N2E2_219at 277.167 kb on + strand, within Pf6N2E2_219at 277.168 kb on - strand, within Pf6N2E2_219at 277.225 kb on + strand, within Pf6N2E2_219at 277.225 kb on + strand, within Pf6N2E2_219at 277.226 kb on - strand, within Pf6N2E2_219at 277.404 kb on + strand, within Pf6N2E2_219at 277.404 kb on + strand, within Pf6N2E2_219at 277.405 kb on - strand, within Pf6N2E2_219at 277.405 kb on - strand, within Pf6N2E2_219at 277.621 kb on - strand, within Pf6N2E2_219at 277.638 kb on + strandat 277.638 kb on + strandat 277.936 kb on + strand, within Pf6N2E2_220at 277.937 kb on - strand, within Pf6N2E2_220at 278.211 kb on - strand, within Pf6N2E2_220at 278.400 kb on + strand, within Pf6N2E2_220at 278.402 kb on + strand, within Pf6N2E2_220at 278.403 kb on - strand, within Pf6N2E2_220at 278.403 kb on - strand, within Pf6N2E2_220at 278.474 kb on + strand, within Pf6N2E2_220at 278.613 kb on - strand, within Pf6N2E2_220at 278.979 kb on - strand, within Pf6N2E2_220at 279.064 kb on - strandat 279.128 kb on + strandat 279.238 kb on + strandat 279.238 kb on + strandat 279.239 kb on - strandat 279.444 kb on + strandat 279.522 kb on - strand, within Pf6N2E2_221at 279.542 kb on + strand, within Pf6N2E2_221at 279.542 kb on + strand, within Pf6N2E2_221at 279.542 kb on + strand, within Pf6N2E2_221at 279.542 kb on + strand, within Pf6N2E2_221at 279.542 kb on + strand, within Pf6N2E2_221at 279.543 kb on - strand, within Pf6N2E2_221at 279.758 kb on + strand, within Pf6N2E2_221at 279.758 kb on + strand, within Pf6N2E2_221at 279.758 kb on + strand, within Pf6N2E2_221at 279.759 kb on - strand, within Pf6N2E2_221at 279.878 kb on + strand, within Pf6N2E2_221at 279.878 kb on + strand, within Pf6N2E2_221at 279.878 kb on + strand, within Pf6N2E2_221at 279.878 kb on + strand, within Pf6N2E2_221at 279.878 kb on + strand, within Pf6N2E2_221at 279.878 kb on + strand, within Pf6N2E2_221at 279.878 kb on + strand, within Pf6N2E2_221at 279.879 kb on - strand, within Pf6N2E2_221at 279.882 kb on + strand, within Pf6N2E2_221at 279.882 kb on + strand, within Pf6N2E2_221at 279.882 kb on + strand, within Pf6N2E2_221at 279.882 kb on + strand, within Pf6N2E2_221at 279.883 kb on - strand, within Pf6N2E2_221at 279.883 kb on - strand, within Pf6N2E2_221at 279.883 kb on - strand, within Pf6N2E2_221at 279.883 kb on - strand, within Pf6N2E2_221at 279.883 kb on - strand, within Pf6N2E2_221at 279.883 kb on - strand, within Pf6N2E2_221at 279.883 kb on - strand, within Pf6N2E2_221at 279.945 kb on + strand, within Pf6N2E2_221at 279.945 kb on + strand, within Pf6N2E2_221at 279.946 kb on - strand, within Pf6N2E2_221at 279.946 kb on - strand, within Pf6N2E2_221at 280.004 kb on + strand, within Pf6N2E2_221at 280.004 kb on + strand, within Pf6N2E2_221at 280.004 kb on + strand, within Pf6N2E2_221at 280.005 kb on - strand, within Pf6N2E2_221at 280.005 kb on - strand, within Pf6N2E2_221at 280.005 kb on - strand, within Pf6N2E2_221at 280.005 kb on - strand, within Pf6N2E2_221at 280.118 kb on + strand, within Pf6N2E2_221at 280.118 kb on + strand, within Pf6N2E2_221at 280.118 kb on + strand, within Pf6N2E2_221at 280.119 kb on - strand, within Pf6N2E2_221at 280.119 kb on - strand, within Pf6N2E2_221at 280.119 kb on - strand, within Pf6N2E2_221

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium iodide 0.125 M
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276,798 + Pf6N2E2_218 0.55 -0.5
276,798 + Pf6N2E2_218 0.55 -0.2
276,799 - Pf6N2E2_218 0.55 +1.0
276,935 + Pf6N2E2_218 0.85 +1.0
276,935 + Pf6N2E2_218 0.85 -0.2
276,979 + +0.7
276,983 + +0.2
276,983 + +0.7
276,983 + -0.1
276,984 - +1.0
276,998 + +0.1
276,999 - +0.1
277,060 - -0.8
277,060 - -0.3
277,060 - +0.6
277,060 - +0.5
277,060 - -0.0
277,167 + Pf6N2E2_219 0.21 -0.9
277,167 + Pf6N2E2_219 0.21 +0.6
277,167 + Pf6N2E2_219 0.21 -1.1
277,168 - Pf6N2E2_219 0.21 +0.2
277,225 + Pf6N2E2_219 0.30 -0.1
277,225 + Pf6N2E2_219 0.30 +0.7
277,226 - Pf6N2E2_219 0.30 -0.6
277,404 + Pf6N2E2_219 0.56 +0.1
277,404 + Pf6N2E2_219 0.56 -0.7
277,405 - Pf6N2E2_219 0.56 +2.0
277,405 - Pf6N2E2_219 0.56 +0.1
277,621 - Pf6N2E2_219 0.88 -0.2
277,638 + +0.4
277,638 + +0.8
277,936 + Pf6N2E2_220 0.16 +0.3
277,937 - Pf6N2E2_220 0.16 +0.6
278,211 - Pf6N2E2_220 0.35 +2.3
278,400 + Pf6N2E2_220 0.49 +0.7
278,402 + Pf6N2E2_220 0.49 +0.3
278,403 - Pf6N2E2_220 0.49 -0.1
278,403 - Pf6N2E2_220 0.49 +1.3
278,474 + Pf6N2E2_220 0.54 -0.5
278,613 - Pf6N2E2_220 0.64 -1.0
278,979 - Pf6N2E2_220 0.90 +0.7
279,064 - +0.8
279,128 + +1.3
279,238 + +0.7
279,238 + -0.9
279,239 - -0.5
279,444 + -0.3
279,522 - Pf6N2E2_221 0.24 +0.8
279,542 + Pf6N2E2_221 0.25 -1.2
279,542 + Pf6N2E2_221 0.25 +0.7
279,542 + Pf6N2E2_221 0.25 +1.4
279,542 + Pf6N2E2_221 0.25 -1.1
279,542 + Pf6N2E2_221 0.25 +0.1
279,543 - Pf6N2E2_221 0.25 +1.3
279,758 + Pf6N2E2_221 0.43 +0.3
279,758 + Pf6N2E2_221 0.43 +0.6
279,758 + Pf6N2E2_221 0.43 +1.6
279,759 - Pf6N2E2_221 0.44 +0.8
279,878 + Pf6N2E2_221 0.54 -0.2
279,878 + Pf6N2E2_221 0.54 +0.7
279,878 + Pf6N2E2_221 0.54 +0.4
279,878 + Pf6N2E2_221 0.54 +0.4
279,878 + Pf6N2E2_221 0.54 -0.2
279,878 + Pf6N2E2_221 0.54 -2.1
279,878 + Pf6N2E2_221 0.54 +0.0
279,879 - Pf6N2E2_221 0.54 -0.7
279,882 + Pf6N2E2_221 0.54 -0.3
279,882 + Pf6N2E2_221 0.54 +0.8
279,882 + Pf6N2E2_221 0.54 +0.5
279,882 + Pf6N2E2_221 0.54 +0.4
279,883 - Pf6N2E2_221 0.54 +1.3
279,883 - Pf6N2E2_221 0.54 -0.9
279,883 - Pf6N2E2_221 0.54 -0.3
279,883 - Pf6N2E2_221 0.54 +0.3
279,883 - Pf6N2E2_221 0.54 +0.8
279,883 - Pf6N2E2_221 0.54 +0.6
279,883 - Pf6N2E2_221 0.54 +1.8
279,945 + Pf6N2E2_221 0.59 +0.8
279,945 + Pf6N2E2_221 0.59 +1.1
279,946 - Pf6N2E2_221 0.59 -0.6
279,946 - Pf6N2E2_221 0.59 -0.5
280,004 + Pf6N2E2_221 0.64 +0.8
280,004 + Pf6N2E2_221 0.64 -1.4
280,004 + Pf6N2E2_221 0.64 -0.1
280,005 - Pf6N2E2_221 0.64 +0.2
280,005 - Pf6N2E2_221 0.64 -0.1
280,005 - Pf6N2E2_221 0.64 +0.9
280,005 - Pf6N2E2_221 0.64 +0.3
280,118 + Pf6N2E2_221 0.74 +1.3
280,118 + Pf6N2E2_221 0.74 +0.4
280,118 + Pf6N2E2_221 0.74 -0.6
280,119 - Pf6N2E2_221 0.74 -0.0
280,119 - Pf6N2E2_221 0.74 +0.8
280,119 - Pf6N2E2_221 0.74 +0.8

Or see this region's nucleotide sequence