Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06139

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06138 and H281DRAFT_06139 are separated by 207 nucleotidesH281DRAFT_06139 and H281DRAFT_06140 are separated by 265 nucleotides H281DRAFT_06138: H281DRAFT_06138 - DNA-binding transcriptional regulator, LysR family, at 29,413 to 30,309 _06138 H281DRAFT_06139: H281DRAFT_06139 - Predicted metal-dependent hydrolase, TIM-barrel fold, at 30,517 to 31,473 _06139 H281DRAFT_06140: H281DRAFT_06140 - LysR substrate binding domain-containing protein, at 31,739 to 31,948 _06140 Position (kb) 30 31 32Strain fitness (log2 ratio) -1 0 1at 29.563 kb on - strand, within H281DRAFT_06138at 29.738 kb on + strand, within H281DRAFT_06138at 29.931 kb on + strand, within H281DRAFT_06138at 29.973 kb on - strand, within H281DRAFT_06138at 29.973 kb on - strand, within H281DRAFT_06138at 30.034 kb on + strand, within H281DRAFT_06138at 30.035 kb on - strand, within H281DRAFT_06138at 30.035 kb on - strand, within H281DRAFT_06138at 30.035 kb on - strand, within H281DRAFT_06138at 30.296 kb on + strandat 30.336 kb on + strandat 30.337 kb on - strandat 30.377 kb on - strandat 30.401 kb on - strandat 30.456 kb on + strandat 30.457 kb on - strandat 30.457 kb on - strandat 30.457 kb on - strandat 30.457 kb on - strandat 30.502 kb on + strandat 30.502 kb on + strandat 30.509 kb on + strandat 30.510 kb on - strandat 30.510 kb on - strandat 30.696 kb on + strand, within H281DRAFT_06139at 30.697 kb on - strand, within H281DRAFT_06139at 30.700 kb on + strand, within H281DRAFT_06139at 30.700 kb on + strand, within H281DRAFT_06139at 30.701 kb on - strand, within H281DRAFT_06139at 30.822 kb on + strand, within H281DRAFT_06139at 30.822 kb on + strand, within H281DRAFT_06139at 30.822 kb on + strand, within H281DRAFT_06139at 30.827 kb on - strand, within H281DRAFT_06139at 30.827 kb on - strand, within H281DRAFT_06139at 30.903 kb on + strand, within H281DRAFT_06139at 31.046 kb on + strand, within H281DRAFT_06139at 31.046 kb on + strand, within H281DRAFT_06139at 31.046 kb on + strand, within H281DRAFT_06139at 31.046 kb on + strand, within H281DRAFT_06139at 31.046 kb on + strand, within H281DRAFT_06139at 31.046 kb on + strand, within H281DRAFT_06139at 31.047 kb on - strand, within H281DRAFT_06139at 31.047 kb on - strand, within H281DRAFT_06139at 31.047 kb on - strand, within H281DRAFT_06139at 31.047 kb on - strand, within H281DRAFT_06139at 31.070 kb on - strand, within H281DRAFT_06139at 31.139 kb on + strand, within H281DRAFT_06139at 31.139 kb on + strand, within H281DRAFT_06139at 31.174 kb on - strand, within H281DRAFT_06139at 31.210 kb on + strand, within H281DRAFT_06139at 31.215 kb on - strand, within H281DRAFT_06139at 31.215 kb on - strand, within H281DRAFT_06139at 31.215 kb on - strand, within H281DRAFT_06139at 31.215 kb on - strandat 31.215 kb on - strand, within H281DRAFT_06139at 31.215 kb on - strand, within H281DRAFT_06139at 31.215 kb on - strand, within H281DRAFT_06139at 31.232 kb on - strand, within H281DRAFT_06139at 31.232 kb on - strand, within H281DRAFT_06139at 31.262 kb on - strand, within H281DRAFT_06139at 31.277 kb on + strand, within H281DRAFT_06139at 31.277 kb on + strand, within H281DRAFT_06139at 31.277 kb on + strand, within H281DRAFT_06139at 31.278 kb on - strand, within H281DRAFT_06139at 31.278 kb on - strand, within H281DRAFT_06139at 31.278 kb on - strand, within H281DRAFT_06139at 31.278 kb on - strand, within H281DRAFT_06139at 31.291 kb on + strand, within H281DRAFT_06139at 31.292 kb on - strand, within H281DRAFT_06139at 31.399 kb on - strandat 31.399 kb on - strandat 31.493 kb on - strandat 31.511 kb on + strandat 31.512 kb on - strandat 31.689 kb on + strandat 31.695 kb on + strandat 31.846 kb on + strand, within H281DRAFT_06140at 31.846 kb on + strand, within H281DRAFT_06140at 31.847 kb on - strand, within H281DRAFT_06140at 31.847 kb on - strand, within H281DRAFT_06140at 31.853 kb on + strand, within H281DRAFT_06140at 31.853 kb on + strand, within H281DRAFT_06140at 31.889 kb on + strand, within H281DRAFT_06140at 31.890 kb on - strand, within H281DRAFT_06140at 31.890 kb on - strand, within H281DRAFT_06140at 31.890 kb on - strand, within H281DRAFT_06140at 31.924 kb on - strand, within H281DRAFT_06140at 31.975 kb on - strandat 32.012 kb on + strandat 32.041 kb on + strandat 32.083 kb on + strandat 32.083 kb on + strandat 32.131 kb on + strandat 32.200 kb on - strandat 32.254 kb on - strandat 32.254 kb on - strandat 32.257 kb on - strandat 32.325 kb on - strandat 32.333 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.373 kb on - strandat 32.373 kb on - strandat 32.373 kb on - strandat 32.373 kb on - strandat 32.421 kb on + strandat 32.458 kb on + strandat 32.459 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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29,563 - H281DRAFT_06138 0.17 +0.1
29,738 + H281DRAFT_06138 0.36 -0.4
29,931 + H281DRAFT_06138 0.58 -0.7
29,973 - H281DRAFT_06138 0.62 -0.1
29,973 - H281DRAFT_06138 0.62 -0.1
30,034 + H281DRAFT_06138 0.69 -0.0
30,035 - H281DRAFT_06138 0.69 +0.3
30,035 - H281DRAFT_06138 0.69 -0.3
30,035 - H281DRAFT_06138 0.69 -0.2
30,296 + -0.5
30,336 + +0.1
30,337 - +0.1
30,377 - -0.9
30,401 - -0.7
30,456 + +0.2
30,457 - -1.0
30,457 - -0.2
30,457 - -0.3
30,457 - +0.2
30,502 + -0.1
30,502 + +0.1
30,509 + -0.0
30,510 - +0.2
30,510 - +0.2
30,696 + H281DRAFT_06139 0.19 +0.8
30,697 - H281DRAFT_06139 0.19 +0.7
30,700 + H281DRAFT_06139 0.19 +0.0
30,700 + H281DRAFT_06139 0.19 +0.2
30,701 - H281DRAFT_06139 0.19 +0.7
30,822 + H281DRAFT_06139 0.32 -0.5
30,822 + H281DRAFT_06139 0.32 -1.0
30,822 + H281DRAFT_06139 0.32 -0.0
30,827 - H281DRAFT_06139 0.32 -0.2
30,827 - H281DRAFT_06139 0.32 -0.3
30,903 + H281DRAFT_06139 0.40 -0.7
31,046 + H281DRAFT_06139 0.55 -0.2
31,046 + H281DRAFT_06139 0.55 -0.0
31,046 + H281DRAFT_06139 0.55 +0.3
31,046 + H281DRAFT_06139 0.55 -1.3
31,046 + H281DRAFT_06139 0.55 -0.2
31,046 + H281DRAFT_06139 0.55 +0.2
31,047 - H281DRAFT_06139 0.55 -1.2
31,047 - H281DRAFT_06139 0.55 +0.4
31,047 - H281DRAFT_06139 0.55 -0.4
31,047 - H281DRAFT_06139 0.55 -0.4
31,070 - H281DRAFT_06139 0.58 -0.4
31,139 + H281DRAFT_06139 0.65 +0.2
31,139 + H281DRAFT_06139 0.65 -0.1
31,174 - H281DRAFT_06139 0.69 -0.0
31,210 + H281DRAFT_06139 0.72 -0.3
31,215 - H281DRAFT_06139 0.73 -1.0
31,215 - H281DRAFT_06139 0.73 +0.3
31,215 - H281DRAFT_06139 0.73 +0.1
31,215 - -0.2
31,215 - H281DRAFT_06139 0.73 +0.1
31,215 - H281DRAFT_06139 0.73 -0.3
31,215 - H281DRAFT_06139 0.73 +0.3
31,232 - H281DRAFT_06139 0.75 -0.1
31,232 - H281DRAFT_06139 0.75 -0.4
31,262 - H281DRAFT_06139 0.78 +0.1
31,277 + H281DRAFT_06139 0.79 -0.2
31,277 + H281DRAFT_06139 0.79 +0.6
31,277 + H281DRAFT_06139 0.79 -0.3
31,278 - H281DRAFT_06139 0.80 -0.7
31,278 - H281DRAFT_06139 0.80 +1.0
31,278 - H281DRAFT_06139 0.80 -0.8
31,278 - H281DRAFT_06139 0.80 -0.1
31,291 + H281DRAFT_06139 0.81 -0.7
31,292 - H281DRAFT_06139 0.81 -0.7
31,399 - -0.6
31,399 - +0.6
31,493 - +0.7
31,511 + +0.7
31,512 - +0.5
31,689 + +0.3
31,695 + -0.1
31,846 + H281DRAFT_06140 0.51 -0.0
31,846 + H281DRAFT_06140 0.51 -0.8
31,847 - H281DRAFT_06140 0.51 +0.6
31,847 - H281DRAFT_06140 0.51 -0.4
31,853 + H281DRAFT_06140 0.54 +0.3
31,853 + H281DRAFT_06140 0.54 -0.2
31,889 + H281DRAFT_06140 0.71 +0.6
31,890 - H281DRAFT_06140 0.72 +1.1
31,890 - H281DRAFT_06140 0.72 -0.3
31,890 - H281DRAFT_06140 0.72 +0.6
31,924 - H281DRAFT_06140 0.88 +0.4
31,975 - +0.3
32,012 + +0.4
32,041 + -0.6
32,083 + -0.0
32,083 + +1.2
32,131 + +0.0
32,200 - -0.1
32,254 - +0.9
32,254 - +0.3
32,257 - -0.3
32,325 - -0.2
32,333 + +0.2
32,372 + +0.9
32,372 + -0.2
32,372 + +0.8
32,372 + +0.5
32,372 + +0.2
32,372 + +0.5
32,372 + +0.6
32,372 + +0.1
32,372 + -0.2
32,372 + -0.9
32,373 - +0.3
32,373 - +0.6
32,373 - +0.6
32,373 - +0.8
32,421 + -0.2
32,458 + -0.4
32,459 - +0.5

Or see this region's nucleotide sequence