Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05789

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05787 and H281DRAFT_05788 are separated by 239 nucleotidesH281DRAFT_05788 and H281DRAFT_05789 overlap by 4 nucleotidesH281DRAFT_05789 and H281DRAFT_05790 are separated by 67 nucleotides H281DRAFT_05787: H281DRAFT_05787 - flagellar hook-basal body complex protein FliE, at 61,228 to 61,578 _05787 H281DRAFT_05788: H281DRAFT_05788 - flagellar protein FliS, at 61,818 to 62,252 _05788 H281DRAFT_05789: H281DRAFT_05789 - flagellar protein FliT, at 62,249 to 62,575 _05789 H281DRAFT_05790: H281DRAFT_05790 - hook-length control protein FliK, at 62,643 to 64,112 _05790 Position (kb) 62 63Strain fitness (log2 ratio) -2 -1 0 1at 61.550 kb on - strandat 61.737 kb on + strandat 61.737 kb on + strandat 61.737 kb on + strandat 61.737 kb on + strandat 61.737 kb on + strandat 61.737 kb on + strandat 61.738 kb on - strandat 61.738 kb on - strandat 61.793 kb on + strandat 61.793 kb on + strandat 61.793 kb on + strandat 61.793 kb on + strandat 61.793 kb on + strandat 61.793 kb on + strandat 61.794 kb on - strandat 61.851 kb on + strandat 61.852 kb on - strandat 61.917 kb on + strand, within H281DRAFT_05788at 61.917 kb on + strand, within H281DRAFT_05788at 62.086 kb on + strand, within H281DRAFT_05788at 62.086 kb on + strand, within H281DRAFT_05788at 62.086 kb on + strand, within H281DRAFT_05788at 62.087 kb on - strand, within H281DRAFT_05788at 62.087 kb on - strand, within H281DRAFT_05788at 62.088 kb on + strand, within H281DRAFT_05788at 62.088 kb on + strand, within H281DRAFT_05788at 62.088 kb on + strand, within H281DRAFT_05788at 62.089 kb on - strand, within H281DRAFT_05788at 62.090 kb on + strandat 62.090 kb on + strand, within H281DRAFT_05788at 62.090 kb on + strand, within H281DRAFT_05788at 62.090 kb on + strand, within H281DRAFT_05788at 62.090 kb on + strand, within H281DRAFT_05788at 62.090 kb on + strand, within H281DRAFT_05788at 62.090 kb on + strand, within H281DRAFT_05788at 62.090 kb on + strand, within H281DRAFT_05788at 62.090 kb on + strand, within H281DRAFT_05788at 62.090 kb on + strand, within H281DRAFT_05788at 62.090 kb on + strand, within H281DRAFT_05788at 62.091 kb on - strand, within H281DRAFT_05788at 62.091 kb on - strand, within H281DRAFT_05788at 62.091 kb on - strand, within H281DRAFT_05788at 62.091 kb on - strand, within H281DRAFT_05788at 62.091 kb on - strand, within H281DRAFT_05788at 62.091 kb on - strand, within H281DRAFT_05788at 62.091 kb on - strand, within H281DRAFT_05788at 62.091 kb on - strand, within H281DRAFT_05788at 62.091 kb on - strand, within H281DRAFT_05788at 62.091 kb on - strand, within H281DRAFT_05788at 62.094 kb on + strand, within H281DRAFT_05788at 62.094 kb on + strand, within H281DRAFT_05788at 62.094 kb on + strand, within H281DRAFT_05788at 62.094 kb on + strand, within H281DRAFT_05788at 62.094 kb on + strand, within H281DRAFT_05788at 62.094 kb on + strand, within H281DRAFT_05788at 62.095 kb on - strand, within H281DRAFT_05788at 62.095 kb on - strand, within H281DRAFT_05788at 62.096 kb on + strand, within H281DRAFT_05788at 62.096 kb on + strand, within H281DRAFT_05788at 62.096 kb on + strand, within H281DRAFT_05788at 62.096 kb on + strand, within H281DRAFT_05788at 62.096 kb on + strand, within H281DRAFT_05788at 62.097 kb on - strand, within H281DRAFT_05788at 62.097 kb on - strand, within H281DRAFT_05788at 62.097 kb on - strand, within H281DRAFT_05788at 62.097 kb on - strand, within H281DRAFT_05788at 62.125 kb on + strand, within H281DRAFT_05788at 62.125 kb on + strand, within H281DRAFT_05788at 62.125 kb on + strand, within H281DRAFT_05788at 62.125 kb on + strand, within H281DRAFT_05788at 62.126 kb on - strand, within H281DRAFT_05788at 62.209 kb on + strandat 62.209 kb on + strandat 62.267 kb on + strandat 62.268 kb on - strandat 62.280 kb on - strandat 62.367 kb on - strand, within H281DRAFT_05789at 62.561 kb on + strandat 62.561 kb on + strandat 62.896 kb on + strand, within H281DRAFT_05790at 62.897 kb on - strand, within H281DRAFT_05790at 62.985 kb on - strand, within H281DRAFT_05790at 63.090 kb on + strand, within H281DRAFT_05790at 63.091 kb on - strand, within H281DRAFT_05790at 63.410 kb on - strand, within H281DRAFT_05790

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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61,550 - +0.8
61,737 + +0.8
61,737 + +0.0
61,737 + +0.2
61,737 + -0.4
61,737 + +1.2
61,737 + +0.5
61,738 - -0.6
61,738 - -0.4
61,793 + -0.2
61,793 + +0.1
61,793 + +0.2
61,793 + +0.1
61,793 + +0.2
61,793 + -1.5
61,794 - -2.7
61,851 + -0.3
61,852 - -0.7
61,917 + H281DRAFT_05788 0.23 +0.2
61,917 + H281DRAFT_05788 0.23 -0.3
62,086 + H281DRAFT_05788 0.62 -0.7
62,086 + H281DRAFT_05788 0.62 +0.1
62,086 + H281DRAFT_05788 0.62 -0.7
62,087 - H281DRAFT_05788 0.62 -2.3
62,087 - H281DRAFT_05788 0.62 -1.1
62,088 + H281DRAFT_05788 0.62 -2.1
62,088 + H281DRAFT_05788 0.62 -0.6
62,088 + H281DRAFT_05788 0.62 -0.4
62,089 - H281DRAFT_05788 0.62 -1.0
62,090 + +0.3
62,090 + H281DRAFT_05788 0.63 -0.2
62,090 + H281DRAFT_05788 0.63 -0.5
62,090 + H281DRAFT_05788 0.63 +1.0
62,090 + H281DRAFT_05788 0.63 -0.3
62,090 + H281DRAFT_05788 0.63 -0.2
62,090 + H281DRAFT_05788 0.63 -1.0
62,090 + H281DRAFT_05788 0.63 -0.6
62,090 + H281DRAFT_05788 0.63 -1.4
62,090 + H281DRAFT_05788 0.63 -0.5
62,090 + H281DRAFT_05788 0.63 -1.0
62,091 - H281DRAFT_05788 0.63 -0.6
62,091 - H281DRAFT_05788 0.63 -0.6
62,091 - H281DRAFT_05788 0.63 -0.5
62,091 - H281DRAFT_05788 0.63 -1.7
62,091 - H281DRAFT_05788 0.63 -2.4
62,091 - H281DRAFT_05788 0.63 -1.3
62,091 - H281DRAFT_05788 0.63 -1.2
62,091 - H281DRAFT_05788 0.63 -0.6
62,091 - H281DRAFT_05788 0.63 -2.5
62,091 - H281DRAFT_05788 0.63 -1.6
62,094 + H281DRAFT_05788 0.63 -0.1
62,094 + H281DRAFT_05788 0.63 -0.4
62,094 + H281DRAFT_05788 0.63 +0.9
62,094 + H281DRAFT_05788 0.63 +1.1
62,094 + H281DRAFT_05788 0.63 -0.6
62,094 + H281DRAFT_05788 0.63 +0.2
62,095 - H281DRAFT_05788 0.64 -1.2
62,095 - H281DRAFT_05788 0.64 -0.7
62,096 + H281DRAFT_05788 0.64 -0.7
62,096 + H281DRAFT_05788 0.64 +0.7
62,096 + H281DRAFT_05788 0.64 +0.6
62,096 + H281DRAFT_05788 0.64 -0.1
62,096 + H281DRAFT_05788 0.64 -1.3
62,097 - H281DRAFT_05788 0.64 -2.0
62,097 - H281DRAFT_05788 0.64 -0.0
62,097 - H281DRAFT_05788 0.64 -2.0
62,097 - H281DRAFT_05788 0.64 -1.7
62,125 + H281DRAFT_05788 0.71 -0.7
62,125 + H281DRAFT_05788 0.71 -0.8
62,125 + H281DRAFT_05788 0.71 -0.5
62,125 + H281DRAFT_05788 0.71 -0.2
62,126 - H281DRAFT_05788 0.71 +0.4
62,209 + +0.0
62,209 + +0.3
62,267 + +0.3
62,268 - -1.9
62,280 - -0.6
62,367 - H281DRAFT_05789 0.36 -0.8
62,561 + +0.7
62,561 + +0.1
62,896 + H281DRAFT_05790 0.17 -1.1
62,897 - H281DRAFT_05790 0.17 -1.5
62,985 - H281DRAFT_05790 0.23 +0.2
63,090 + H281DRAFT_05790 0.30 -0.5
63,091 - H281DRAFT_05790 0.30 +0.7
63,410 - H281DRAFT_05790 0.52 -0.1

Or see this region's nucleotide sequence