Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04015

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04014 and H281DRAFT_04015 are separated by 334 nucleotidesH281DRAFT_04015 and H281DRAFT_04016 are separated by 204 nucleotides H281DRAFT_04014: H281DRAFT_04014 - protein of unknown function (DUF4145), at 116,172 to 116,837 _04014 H281DRAFT_04015: H281DRAFT_04015 - hypothetical protein, at 117,172 to 117,402 _04015 H281DRAFT_04016: H281DRAFT_04016 - MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein, at 117,607 to 118,959 _04016 Position (kb) 117 118Strain fitness (log2 ratio) -1 0 1 2at 116.174 kb on - strandat 116.174 kb on - strandat 116.208 kb on - strandat 116.254 kb on + strand, within H281DRAFT_04014at 116.254 kb on + strand, within H281DRAFT_04014at 116.254 kb on + strand, within H281DRAFT_04014at 116.255 kb on - strand, within H281DRAFT_04014at 116.255 kb on - strand, within H281DRAFT_04014at 116.255 kb on - strand, within H281DRAFT_04014at 116.255 kb on - strand, within H281DRAFT_04014at 116.255 kb on - strand, within H281DRAFT_04014at 116.255 kb on - strand, within H281DRAFT_04014at 116.313 kb on + strand, within H281DRAFT_04014at 116.339 kb on + strand, within H281DRAFT_04014at 116.340 kb on - strand, within H281DRAFT_04014at 116.381 kb on + strand, within H281DRAFT_04014at 116.390 kb on + strand, within H281DRAFT_04014at 116.430 kb on + strand, within H281DRAFT_04014at 116.431 kb on - strand, within H281DRAFT_04014at 116.431 kb on - strand, within H281DRAFT_04014at 116.458 kb on + strand, within H281DRAFT_04014at 116.481 kb on + strand, within H281DRAFT_04014at 116.481 kb on + strand, within H281DRAFT_04014at 116.482 kb on - strand, within H281DRAFT_04014at 116.531 kb on + strand, within H281DRAFT_04014at 116.531 kb on + strand, within H281DRAFT_04014at 116.561 kb on - strand, within H281DRAFT_04014at 116.561 kb on - strand, within H281DRAFT_04014at 116.573 kb on + strand, within H281DRAFT_04014at 116.574 kb on - strand, within H281DRAFT_04014at 116.670 kb on + strand, within H281DRAFT_04014at 116.674 kb on + strand, within H281DRAFT_04014at 116.674 kb on + strand, within H281DRAFT_04014at 116.675 kb on - strand, within H281DRAFT_04014at 116.708 kb on + strand, within H281DRAFT_04014at 116.708 kb on + strand, within H281DRAFT_04014at 116.708 kb on + strand, within H281DRAFT_04014at 116.708 kb on + strand, within H281DRAFT_04014at 116.709 kb on - strand, within H281DRAFT_04014at 116.709 kb on - strand, within H281DRAFT_04014at 116.709 kb on - strand, within H281DRAFT_04014at 116.709 kb on - strand, within H281DRAFT_04014at 116.710 kb on + strand, within H281DRAFT_04014at 116.711 kb on - strand, within H281DRAFT_04014at 116.711 kb on - strand, within H281DRAFT_04014at 116.746 kb on + strand, within H281DRAFT_04014at 116.747 kb on - strand, within H281DRAFT_04014at 116.747 kb on - strand, within H281DRAFT_04014at 116.747 kb on - strandat 116.837 kb on + strandat 116.849 kb on + strandat 116.849 kb on + strandat 116.849 kb on + strandat 116.849 kb on + strandat 116.849 kb on + strandat 116.850 kb on - strandat 116.851 kb on + strandat 116.851 kb on + strandat 116.851 kb on + strandat 116.860 kb on + strandat 116.861 kb on - strandat 116.871 kb on + strandat 116.871 kb on + strandat 116.871 kb on + strandat 116.871 kb on + strandat 116.871 kb on + strandat 116.872 kb on - strandat 116.872 kb on - strandat 116.872 kb on - strandat 116.872 kb on - strandat 116.905 kb on + strandat 116.906 kb on - strandat 117.038 kb on + strandat 117.055 kb on - strandat 117.278 kb on + strand, within H281DRAFT_04015at 117.297 kb on - strand, within H281DRAFT_04015at 117.311 kb on + strand, within H281DRAFT_04015at 117.311 kb on + strand, within H281DRAFT_04015at 117.311 kb on + strand, within H281DRAFT_04015at 117.312 kb on - strand, within H281DRAFT_04015at 117.435 kb on + strandat 117.435 kb on + strandat 117.435 kb on + strandat 117.435 kb on + strandat 117.435 kb on + strandat 117.435 kb on + strandat 117.435 kb on + strandat 117.436 kb on - strandat 117.436 kb on - strandat 117.436 kb on - strandat 117.436 kb on - strandat 117.436 kb on - strandat 117.436 kb on - strandat 117.522 kb on - strandat 117.645 kb on + strandat 117.668 kb on + strandat 117.668 kb on + strandat 117.668 kb on + strandat 117.669 kb on - strandat 117.669 kb on - strandat 117.705 kb on + strandat 117.706 kb on - strandat 117.706 kb on - strandat 117.706 kb on - strandat 117.951 kb on + strand, within H281DRAFT_04016at 117.951 kb on + strand, within H281DRAFT_04016at 117.951 kb on + strand, within H281DRAFT_04016at 118.070 kb on + strand, within H281DRAFT_04016at 118.071 kb on - strand, within H281DRAFT_04016at 118.095 kb on - strand, within H281DRAFT_04016at 118.103 kb on + strand, within H281DRAFT_04016at 118.103 kb on + strand, within H281DRAFT_04016at 118.103 kb on + strand, within H281DRAFT_04016at 118.103 kb on + strandat 118.103 kb on + strand, within H281DRAFT_04016at 118.103 kb on + strand, within H281DRAFT_04016at 118.104 kb on - strand, within H281DRAFT_04016at 118.104 kb on - strand, within H281DRAFT_04016at 118.127 kb on + strand, within H281DRAFT_04016at 118.128 kb on - strand, within H281DRAFT_04016at 118.167 kb on + strand, within H281DRAFT_04016at 118.168 kb on - strand, within H281DRAFT_04016at 118.168 kb on - strand, within H281DRAFT_04016at 118.168 kb on - strand, within H281DRAFT_04016at 118.168 kb on - strand, within H281DRAFT_04016at 118.168 kb on - strand, within H281DRAFT_04016at 118.168 kb on - strand, within H281DRAFT_04016at 118.168 kb on - strand, within H281DRAFT_04016at 118.168 kb on - strand, within H281DRAFT_04016at 118.205 kb on + strand, within H281DRAFT_04016at 118.206 kb on - strand, within H281DRAFT_04016at 118.206 kb on - strand, within H281DRAFT_04016

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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116,174 - -0.1
116,174 - +0.2
116,208 - +1.7
116,254 + H281DRAFT_04014 0.12 -0.1
116,254 + H281DRAFT_04014 0.12 +0.2
116,254 + H281DRAFT_04014 0.12 +0.3
116,255 - H281DRAFT_04014 0.12 +2.6
116,255 - H281DRAFT_04014 0.12 -0.5
116,255 - H281DRAFT_04014 0.12 +0.2
116,255 - H281DRAFT_04014 0.12 +0.2
116,255 - H281DRAFT_04014 0.12 +0.4
116,255 - H281DRAFT_04014 0.12 -0.2
116,313 + H281DRAFT_04014 0.21 +0.3
116,339 + H281DRAFT_04014 0.25 +0.6
116,340 - H281DRAFT_04014 0.25 +0.3
116,381 + H281DRAFT_04014 0.31 +1.3
116,390 + H281DRAFT_04014 0.33 +0.1
116,430 + H281DRAFT_04014 0.39 +0.4
116,431 - H281DRAFT_04014 0.39 +0.7
116,431 - H281DRAFT_04014 0.39 +0.7
116,458 + H281DRAFT_04014 0.43 +0.2
116,481 + H281DRAFT_04014 0.46 +0.0
116,481 + H281DRAFT_04014 0.46 +0.2
116,482 - H281DRAFT_04014 0.47 -0.1
116,531 + H281DRAFT_04014 0.54 +0.3
116,531 + H281DRAFT_04014 0.54 -1.5
116,561 - H281DRAFT_04014 0.58 +0.2
116,561 - H281DRAFT_04014 0.58 +0.1
116,573 + H281DRAFT_04014 0.60 +0.0
116,574 - H281DRAFT_04014 0.60 +0.3
116,670 + H281DRAFT_04014 0.75 +0.2
116,674 + H281DRAFT_04014 0.75 -1.2
116,674 + H281DRAFT_04014 0.75 +0.4
116,675 - H281DRAFT_04014 0.76 -0.1
116,708 + H281DRAFT_04014 0.80 -0.1
116,708 + H281DRAFT_04014 0.80 +0.4
116,708 + H281DRAFT_04014 0.80 +0.1
116,708 + H281DRAFT_04014 0.80 +0.2
116,709 - H281DRAFT_04014 0.81 -0.0
116,709 - H281DRAFT_04014 0.81 -0.6
116,709 - H281DRAFT_04014 0.81 +0.3
116,709 - H281DRAFT_04014 0.81 -0.9
116,710 + H281DRAFT_04014 0.81 -0.2
116,711 - H281DRAFT_04014 0.81 -0.8
116,711 - H281DRAFT_04014 0.81 -0.1
116,746 + H281DRAFT_04014 0.86 +0.0
116,747 - H281DRAFT_04014 0.86 +0.5
116,747 - H281DRAFT_04014 0.86 -0.4
116,747 - -0.4
116,837 + +0.6
116,849 + -0.4
116,849 + +0.6
116,849 + -0.0
116,849 + +1.4
116,849 + -0.8
116,850 - +1.4
116,851 + +0.1
116,851 + +0.8
116,851 + +0.2
116,860 + +0.7
116,861 - +0.2
116,871 + +0.3
116,871 + -0.4
116,871 + -0.2
116,871 + -0.2
116,871 + +0.0
116,872 - -1.0
116,872 - +0.3
116,872 - -0.2
116,872 - +0.3
116,905 + -0.2
116,906 - +0.1
117,038 + +0.8
117,055 - +0.8
117,278 + H281DRAFT_04015 0.46 +0.2
117,297 - H281DRAFT_04015 0.54 +0.3
117,311 + H281DRAFT_04015 0.60 -0.1
117,311 + H281DRAFT_04015 0.60 +0.1
117,311 + H281DRAFT_04015 0.60 -0.1
117,312 - H281DRAFT_04015 0.61 +0.8
117,435 + -0.3
117,435 + +0.3
117,435 + -0.4
117,435 + -1.0
117,435 + +0.0
117,435 + -0.6
117,435 + +0.1
117,436 - +0.7
117,436 - +0.7
117,436 - -0.4
117,436 - -0.4
117,436 - -0.1
117,436 - +0.6
117,522 - +0.1
117,645 + +0.3
117,668 + +0.5
117,668 + +0.4
117,668 + +0.1
117,669 - -0.4
117,669 - -1.7
117,705 + -0.2
117,706 - +0.7
117,706 - +0.6
117,706 - +0.5
117,951 + H281DRAFT_04016 0.25 +0.6
117,951 + H281DRAFT_04016 0.25 -0.0
117,951 + H281DRAFT_04016 0.25 +0.3
118,070 + H281DRAFT_04016 0.34 +1.0
118,071 - H281DRAFT_04016 0.34 +0.2
118,095 - H281DRAFT_04016 0.36 +0.5
118,103 + H281DRAFT_04016 0.37 +1.1
118,103 + H281DRAFT_04016 0.37 +0.9
118,103 + H281DRAFT_04016 0.37 +0.1
118,103 + -0.2
118,103 + H281DRAFT_04016 0.37 +0.2
118,103 + H281DRAFT_04016 0.37 +0.4
118,104 - H281DRAFT_04016 0.37 +0.3
118,104 - H281DRAFT_04016 0.37 +0.3
118,127 + H281DRAFT_04016 0.38 +0.6
118,128 - H281DRAFT_04016 0.39 +0.5
118,167 + H281DRAFT_04016 0.41 +0.9
118,168 - H281DRAFT_04016 0.41 +2.6
118,168 - H281DRAFT_04016 0.41 +0.0
118,168 - H281DRAFT_04016 0.41 -0.0
118,168 - H281DRAFT_04016 0.41 +0.1
118,168 - H281DRAFT_04016 0.41 -0.4
118,168 - H281DRAFT_04016 0.41 -0.1
118,168 - H281DRAFT_04016 0.41 +0.3
118,168 - H281DRAFT_04016 0.41 +0.2
118,205 + H281DRAFT_04016 0.44 -0.0
118,206 - H281DRAFT_04016 0.44 -0.1
118,206 - H281DRAFT_04016 0.44 +0.4

Or see this region's nucleotide sequence