Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03339

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03338 and H281DRAFT_03339 are separated by 214 nucleotidesH281DRAFT_03339 and H281DRAFT_03340 are separated by 111 nucleotides H281DRAFT_03338: H281DRAFT_03338 - MFS transporter, MHS family, citrate/tricarballylate:H+ symporter, at 395,438 to 396,736 _03338 H281DRAFT_03339: H281DRAFT_03339 - transcriptional regulator, LysR family, at 396,951 to 397,838 _03339 H281DRAFT_03340: H281DRAFT_03340 - hypothetical protein, at 397,950 to 398,966 _03340 Position (kb) 396 397 398Strain fitness (log2 ratio) -2 -1 0 1at 396.017 kb on + strand, within H281DRAFT_03338at 396.498 kb on + strand, within H281DRAFT_03338at 396.625 kb on - strandat 396.719 kb on - strandat 397.004 kb on - strandat 397.914 kb on + strandat 397.918 kb on - strandat 398.471 kb on + strand, within H281DRAFT_03340at 398.471 kb on + strand, within H281DRAFT_03340at 398.723 kb on - strand, within H281DRAFT_03340at 398.740 kb on - strand, within H281DRAFT_03340at 398.746 kb on - strand, within H281DRAFT_03340

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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396,017 + H281DRAFT_03338 0.45 -0.2
396,498 + H281DRAFT_03338 0.82 -0.3
396,625 - -0.9
396,719 - +0.1
397,004 - -0.3
397,914 + -0.4
397,918 - -1.2
398,471 + H281DRAFT_03340 0.51 +0.1
398,471 + H281DRAFT_03340 0.51 -2.2
398,723 - H281DRAFT_03340 0.76 -0.2
398,740 - H281DRAFT_03340 0.78 -1.3
398,746 - H281DRAFT_03340 0.78 +1.0

Or see this region's nucleotide sequence