Experiment: pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3834 and HP15_3835 overlap by 4 nucleotides HP15_3835 and HP15_3836 are separated by 31 nucleotides HP15_3836 and HP15_3837 are separated by 93 nucleotides HP15_3837 and HP15_3838 are separated by 6 nucleotides HP15_3838 and HP15_3839 are separated by 114 nucleotides
HP15_3834: HP15_3834 - glutathione S-transferase YghU, at 4,061,901 to 4,062,773
_3834
HP15_3835: HP15_3835 - conserved hypothetical protein, at 4,062,770 to 4,063,330
_3835
HP15_3836: HP15_3836 - hypothetical protein, at 4,063,362 to 4,063,544
_3836
HP15_3837: HP15_3837 - hypothetical spermidine synthase, at 4,063,638 to 4,064,381
_3837
HP15_3838: HP15_3838 - ankyrin-like protein, at 4,064,388 to 4,064,720
_3838
HP15_3839: HP15_3839 - YbhB and YbcL, at 4,064,835 to 4,065,458
_3839
Position (kb)
4063
4064
4065 Strain fitness (log2 ratio)
-2
-1
0
1 at 4062.666 kb on - strand, within HP15_3834 at 4062.680 kb on + strand, within HP15_3834 at 4062.680 kb on + strand, within HP15_3834 at 4062.680 kb on + strand, within HP15_3834 at 4062.680 kb on + strand, within HP15_3834 at 4062.688 kb on - strand at 4062.688 kb on - strand at 4062.882 kb on - strand, within HP15_3835 at 4062.904 kb on - strand, within HP15_3835 at 4062.909 kb on - strand, within HP15_3835 at 4062.951 kb on + strand, within HP15_3835 at 4063.108 kb on + strand, within HP15_3835 at 4063.251 kb on + strand, within HP15_3835 at 4063.259 kb on - strand, within HP15_3835 at 4063.422 kb on - strand, within HP15_3836 at 4063.494 kb on + strand, within HP15_3836 at 4063.507 kb on - strand, within HP15_3836 at 4063.554 kb on - strand at 4063.647 kb on - strand at 4063.718 kb on + strand, within HP15_3837 at 4063.752 kb on + strand, within HP15_3837 at 4063.775 kb on - strand, within HP15_3837 at 4063.810 kb on + strand, within HP15_3837 at 4063.928 kb on + strand, within HP15_3837 at 4063.928 kb on + strand, within HP15_3837 at 4063.928 kb on + strand, within HP15_3837 at 4063.928 kb on + strand, within HP15_3837 at 4063.933 kb on + strand, within HP15_3837 at 4063.936 kb on - strand, within HP15_3837 at 4063.938 kb on + strand, within HP15_3837 at 4063.948 kb on + strand, within HP15_3837 at 4063.948 kb on + strand, within HP15_3837 at 4063.956 kb on - strand, within HP15_3837 at 4064.076 kb on + strand, within HP15_3837 at 4064.076 kb on + strand, within HP15_3837 at 4064.081 kb on + strand, within HP15_3837 at 4064.082 kb on - strand, within HP15_3837 at 4064.082 kb on - strand, within HP15_3837 at 4064.084 kb on - strand, within HP15_3837 at 4064.084 kb on - strand, within HP15_3837 at 4064.084 kb on - strand, within HP15_3837 at 4064.084 kb on - strand, within HP15_3837 at 4064.096 kb on + strand, within HP15_3837 at 4064.334 kb on + strand at 4064.358 kb on - strand at 4064.457 kb on - strand, within HP15_3838 at 4064.667 kb on - strand, within HP15_3838 at 4064.773 kb on + strand at 4064.783 kb on + strand at 4064.783 kb on + strand at 4064.783 kb on + strand at 4064.811 kb on - strand at 4064.825 kb on + strand at 4064.873 kb on - strand at 4064.913 kb on - strand, within HP15_3839 at 4064.929 kb on + strand, within HP15_3839 at 4064.984 kb on - strand, within HP15_3839 at 4065.012 kb on - strand, within HP15_3839 at 4065.017 kb on - strand, within HP15_3839 at 4065.052 kb on + strand, within HP15_3839 at 4065.053 kb on - strand, within HP15_3839 at 4065.172 kb on - strand, within HP15_3839 at 4065.194 kb on - strand, within HP15_3839 at 4065.271 kb on + strand, within HP15_3839 at 4065.286 kb on + strand, within HP15_3839 at 4065.294 kb on - strand, within HP15_3839 at 4065.343 kb on + strand, within HP15_3839 at 4065.343 kb on + strand, within HP15_3839 at 4065.351 kb on - strand, within HP15_3839 at 4065.351 kb on - strand, within HP15_3839
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate remove 4,062,666 - HP15_3834 0.88 -0.2 4,062,680 + HP15_3834 0.89 -0.4 4,062,680 + HP15_3834 0.89 +0.2 4,062,680 + HP15_3834 0.89 -0.3 4,062,680 + HP15_3834 0.89 -0.4 4,062,688 - +0.8 4,062,688 - -0.3 4,062,882 - HP15_3835 0.20 -1.4 4,062,904 - HP15_3835 0.24 +0.4 4,062,909 - HP15_3835 0.25 +0.7 4,062,951 + HP15_3835 0.32 +0.2 4,063,108 + HP15_3835 0.60 -0.4 4,063,251 + HP15_3835 0.86 +0.0 4,063,259 - HP15_3835 0.87 +0.3 4,063,422 - HP15_3836 0.33 -0.3 4,063,494 + HP15_3836 0.72 -0.2 4,063,507 - HP15_3836 0.79 -0.0 4,063,554 - -0.2 4,063,647 - -0.4 4,063,718 + HP15_3837 0.11 +1.3 4,063,752 + HP15_3837 0.15 +0.2 4,063,775 - HP15_3837 0.18 -0.9 4,063,810 + HP15_3837 0.23 +0.4 4,063,928 + HP15_3837 0.39 +0.4 4,063,928 + HP15_3837 0.39 -0.1 4,063,928 + HP15_3837 0.39 -0.5 4,063,928 + HP15_3837 0.39 -0.1 4,063,933 + HP15_3837 0.40 -0.6 4,063,936 - HP15_3837 0.40 -0.1 4,063,938 + HP15_3837 0.40 -0.9 4,063,948 + HP15_3837 0.42 -0.7 4,063,948 + HP15_3837 0.42 -0.5 4,063,956 - HP15_3837 0.43 +0.5 4,064,076 + HP15_3837 0.59 +0.4 4,064,076 + HP15_3837 0.59 -0.2 4,064,081 + HP15_3837 0.60 +0.7 4,064,082 - HP15_3837 0.60 -0.0 4,064,082 - HP15_3837 0.60 -0.4 4,064,084 - HP15_3837 0.60 -0.1 4,064,084 - HP15_3837 0.60 -1.5 4,064,084 - HP15_3837 0.60 +0.3 4,064,084 - HP15_3837 0.60 +0.8 4,064,096 + HP15_3837 0.62 +0.4 4,064,334 + +0.1 4,064,358 - +0.6 4,064,457 - HP15_3838 0.21 -0.3 4,064,667 - HP15_3838 0.84 +0.2 4,064,773 + +0.2 4,064,783 + +0.0 4,064,783 + +0.4 4,064,783 + +1.3 4,064,811 - -0.4 4,064,825 + -2.3 4,064,873 - -1.0 4,064,913 - HP15_3839 0.12 -0.9 4,064,929 + HP15_3839 0.15 +0.8 4,064,984 - HP15_3839 0.24 +0.5 4,065,012 - HP15_3839 0.28 +1.4 4,065,017 - HP15_3839 0.29 +0.7 4,065,052 + HP15_3839 0.35 -0.8 4,065,053 - HP15_3839 0.35 +0.4 4,065,172 - HP15_3839 0.54 -0.0 4,065,194 - HP15_3839 0.58 +0.5 4,065,271 + HP15_3839 0.70 -0.3 4,065,286 + HP15_3839 0.72 +0.3 4,065,294 - HP15_3839 0.74 +0.3 4,065,343 + HP15_3839 0.81 +1.1 4,065,343 + HP15_3839 0.81 -0.7 4,065,351 - HP15_3839 0.83 -1.2 4,065,351 - HP15_3839 0.83 -0.2
Or see this region's nucleotide sequence