Strain Fitness in Marinobacter adhaerens HP15 around HP15_2240

Experiment: pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2238 and HP15_2239 are separated by 110 nucleotidesHP15_2239 and HP15_2240 are separated by 121 nucleotidesHP15_2240 and HP15_2241 are separated by 127 nucleotides HP15_2238: HP15_2238 - permease, at 2,359,602 to 2,360,516 _2238 HP15_2239: HP15_2239 - BLUF domain containing protein, at 2,360,627 to 2,361,058 _2239 HP15_2240: HP15_2240 - tRNA-dihydrouridine synthase, TIM-barrel, YjbN, at 2,361,180 to 2,362,214 _2240 HP15_2241: HP15_2241 - transaldolase, at 2,362,342 to 2,363,307 _2241 Position (kb) 2361 2362 2363Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2360.251 kb on - strand, within HP15_2238at 2360.313 kb on + strand, within HP15_2238at 2360.360 kb on - strand, within HP15_2238at 2360.380 kb on + strand, within HP15_2238at 2360.407 kb on - strand, within HP15_2238at 2360.582 kb on + strandat 2360.648 kb on - strandat 2360.766 kb on + strand, within HP15_2239at 2361.008 kb on + strand, within HP15_2239at 2361.008 kb on + strand, within HP15_2239at 2361.009 kb on + strand, within HP15_2239at 2361.117 kb on - strandat 2361.140 kb on + strandat 2361.314 kb on + strand, within HP15_2240at 2361.319 kb on + strand, within HP15_2240at 2361.322 kb on - strand, within HP15_2240at 2361.322 kb on - strand, within HP15_2240at 2361.453 kb on - strand, within HP15_2240at 2361.540 kb on - strand, within HP15_2240at 2361.563 kb on + strand, within HP15_2240at 2361.735 kb on + strand, within HP15_2240at 2361.744 kb on - strand, within HP15_2240at 2361.886 kb on + strand, within HP15_2240at 2361.990 kb on + strand, within HP15_2240at 2362.033 kb on + strand, within HP15_2240at 2362.095 kb on + strand, within HP15_2240at 2362.115 kb on - strandat 2362.143 kb on + strandat 2362.152 kb on - strandat 2362.199 kb on - strandat 2362.309 kb on + strandat 2362.406 kb on + strandat 2362.458 kb on + strand, within HP15_2241at 2362.466 kb on - strandat 2362.497 kb on + strand, within HP15_2241at 2362.505 kb on - strand, within HP15_2241at 2362.505 kb on - strand, within HP15_2241at 2362.693 kb on - strand, within HP15_2241at 2362.705 kb on - strand, within HP15_2241at 2362.745 kb on - strand, within HP15_2241at 2362.766 kb on - strand, within HP15_2241at 2362.797 kb on - strand, within HP15_2241at 2362.848 kb on + strand, within HP15_2241at 2362.864 kb on + strand, within HP15_2241at 2362.910 kb on - strand, within HP15_2241at 2363.075 kb on + strand, within HP15_2241at 2363.075 kb on + strand, within HP15_2241at 2363.083 kb on - strand, within HP15_2241at 2363.083 kb on - strand, within HP15_2241at 2363.083 kb on - strand, within HP15_2241at 2363.083 kb on - strand, within HP15_2241at 2363.094 kb on - strand, within HP15_2241at 2363.179 kb on + strand, within HP15_2241

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate
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2,360,251 - HP15_2238 0.71 +0.1
2,360,313 + HP15_2238 0.78 -0.7
2,360,360 - HP15_2238 0.83 -1.2
2,360,380 + HP15_2238 0.85 -0.4
2,360,407 - HP15_2238 0.88 -0.9
2,360,582 + -0.5
2,360,648 - +3.4
2,360,766 + HP15_2239 0.32 -0.0
2,361,008 + HP15_2239 0.88 +0.6
2,361,008 + HP15_2239 0.88 -0.4
2,361,009 + HP15_2239 0.88 +0.1
2,361,117 - +0.0
2,361,140 + -0.5
2,361,314 + HP15_2240 0.13 -0.0
2,361,319 + HP15_2240 0.13 +1.8
2,361,322 - HP15_2240 0.14 +0.3
2,361,322 - HP15_2240 0.14 -0.0
2,361,453 - HP15_2240 0.26 +1.2
2,361,540 - HP15_2240 0.35 +1.4
2,361,563 + HP15_2240 0.37 +0.8
2,361,735 + HP15_2240 0.54 -1.4
2,361,744 - HP15_2240 0.54 -0.7
2,361,886 + HP15_2240 0.68 +0.1
2,361,990 + HP15_2240 0.78 +0.0
2,362,033 + HP15_2240 0.82 +1.5
2,362,095 + HP15_2240 0.88 -0.3
2,362,115 - -0.7
2,362,143 + +0.1
2,362,152 - -1.1
2,362,199 - -2.7
2,362,309 + -0.2
2,362,406 + +0.3
2,362,458 + HP15_2241 0.12 +0.2
2,362,466 - +0.3
2,362,497 + HP15_2241 0.16 -0.2
2,362,505 - HP15_2241 0.17 +0.3
2,362,505 - HP15_2241 0.17 -0.1
2,362,693 - HP15_2241 0.36 -1.0
2,362,705 - HP15_2241 0.38 +0.4
2,362,745 - HP15_2241 0.42 +0.8
2,362,766 - HP15_2241 0.44 -0.2
2,362,797 - HP15_2241 0.47 +0.4
2,362,848 + HP15_2241 0.52 +0.3
2,362,864 + HP15_2241 0.54 -0.3
2,362,910 - HP15_2241 0.59 +1.2
2,363,075 + HP15_2241 0.76 +0.7
2,363,075 + HP15_2241 0.76 +1.7
2,363,083 - HP15_2241 0.77 -1.1
2,363,083 - HP15_2241 0.77 -0.3
2,363,083 - HP15_2241 0.77 -0.6
2,363,083 - HP15_2241 0.77 -0.3
2,363,094 - HP15_2241 0.78 +0.4
2,363,179 + HP15_2241 0.87 -0.2

Or see this region's nucleotide sequence