Strain Fitness in Marinobacter adhaerens HP15 around HP15_2230

Experiment: pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2229 and HP15_2230 are separated by 179 nucleotidesHP15_2230 and HP15_2231 are separated by 101 nucleotides HP15_2229: HP15_2229 - phosphoenolpyruvate synthase, at 2,345,434 to 2,347,806 _2229 HP15_2230: HP15_2230 - phosphotransferase YdiA, at 2,347,986 to 2,348,801 _2230 HP15_2231: HP15_2231 - pitrilysin metallopeptidase 1, at 2,348,903 to 2,351,827 _2231 Position (kb) 2347 2348 2349Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2347.119 kb on - strand, within HP15_2229at 2347.137 kb on + strand, within HP15_2229at 2347.145 kb on - strand, within HP15_2229at 2347.305 kb on - strand, within HP15_2229at 2347.825 kb on - strandat 2347.875 kb on + strandat 2347.964 kb on + strandat 2347.972 kb on - strandat 2348.031 kb on + strandat 2348.085 kb on - strand, within HP15_2230at 2348.102 kb on - strand, within HP15_2230at 2348.167 kb on + strand, within HP15_2230at 2348.280 kb on - strand, within HP15_2230at 2348.344 kb on + strand, within HP15_2230at 2348.352 kb on - strand, within HP15_2230at 2348.538 kb on + strand, within HP15_2230at 2348.666 kb on + strand, within HP15_2230at 2348.726 kb on + strandat 2348.756 kb on - strandat 2348.796 kb on + strandat 2348.960 kb on + strandat 2349.188 kb on - strandat 2349.272 kb on - strand, within HP15_2231at 2349.301 kb on - strand, within HP15_2231at 2349.301 kb on - strand, within HP15_2231at 2349.415 kb on - strand, within HP15_2231at 2349.427 kb on - strand, within HP15_2231at 2349.474 kb on - strand, within HP15_2231at 2349.595 kb on + strand, within HP15_2231at 2349.637 kb on + strand, within HP15_2231at 2349.750 kb on + strand, within HP15_2231at 2349.771 kb on + strand, within HP15_2231at 2349.779 kb on - strand, within HP15_2231

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate
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2,347,119 - HP15_2229 0.71 +4.2
2,347,137 + HP15_2229 0.72 +3.3
2,347,145 - HP15_2229 0.72 +3.3
2,347,305 - HP15_2229 0.79 +1.2
2,347,825 - +0.9
2,347,875 + +2.0
2,347,964 + -0.7
2,347,972 - -0.2
2,348,031 + +0.5
2,348,085 - HP15_2230 0.12 -0.1
2,348,102 - HP15_2230 0.14 +0.9
2,348,167 + HP15_2230 0.22 +1.7
2,348,280 - HP15_2230 0.36 +1.3
2,348,344 + HP15_2230 0.44 +0.6
2,348,352 - HP15_2230 0.45 +1.0
2,348,538 + HP15_2230 0.68 +0.5
2,348,666 + HP15_2230 0.83 +1.3
2,348,726 + +0.4
2,348,756 - +1.1
2,348,796 + -0.8
2,348,960 + -0.4
2,349,188 - -1.2
2,349,272 - HP15_2231 0.13 -2.0
2,349,301 - HP15_2231 0.14 +0.3
2,349,301 - HP15_2231 0.14 -1.0
2,349,415 - HP15_2231 0.18 -0.5
2,349,427 - HP15_2231 0.18 -0.2
2,349,474 - HP15_2231 0.20 -3.0
2,349,595 + HP15_2231 0.24 -1.5
2,349,637 + HP15_2231 0.25 -0.5
2,349,750 + HP15_2231 0.29 -0.8
2,349,771 + HP15_2231 0.30 +0.3
2,349,779 - HP15_2231 0.30 +0.9

Or see this region's nucleotide sequence