Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01920 and PGA1_c01930 are separated by 2 nucleotides PGA1_c01930 and PGA1_c01940 are separated by 135 nucleotides PGA1_c01940 and PGA1_c01950 are separated by 11 nucleotides
PGA1_c01920: PGA1_c01920 - protease DegQ, at 174,682 to 176,079
_c01920
PGA1_c01930: PGA1_c01930 - replication-associated recombination protein A, at 176,082 to 177,404
_c01930
PGA1_c01940: PGA1_c01940 - crcB-like protein, at 177,540 to 177,920
_c01940
PGA1_c01950: PGA1_c01950 - ribosomal large subunit pseudouridine synthase C, at 177,932 to 178,963
_c01950
Position (kb) 176
177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 175.117 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.188 kb on + strand, within PGA1_c01920 at 175.259 kb on + strand, within PGA1_c01920 at 175.266 kb on - strand, within PGA1_c01920 at 175.288 kb on - strand, within PGA1_c01920 at 175.310 kb on - strand, within PGA1_c01920 at 175.487 kb on - strand, within PGA1_c01920 at 175.498 kb on - strand, within PGA1_c01920 at 175.529 kb on + strand, within PGA1_c01920 at 175.702 kb on + strand, within PGA1_c01920 at 175.737 kb on + strand, within PGA1_c01920 at 175.738 kb on - strand, within PGA1_c01920 at 175.793 kb on + strand, within PGA1_c01920 at 175.793 kb on + strand, within PGA1_c01920 at 175.801 kb on - strand, within PGA1_c01920 at 175.870 kb on + strand, within PGA1_c01920 at 175.885 kb on - strand, within PGA1_c01920 at 175.928 kb on + strand, within PGA1_c01920 at 175.982 kb on + strand at 176.042 kb on + strand at 176.140 kb on - strand at 176.247 kb on + strand, within PGA1_c01930 at 176.336 kb on - strand, within PGA1_c01930 at 176.336 kb on - strand, within PGA1_c01930 at 176.345 kb on + strand, within PGA1_c01930 at 176.431 kb on - strand, within PGA1_c01930 at 176.506 kb on - strand, within PGA1_c01930 at 176.538 kb on - strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.570 kb on - strand, within PGA1_c01930 at 176.570 kb on - strand, within PGA1_c01930 at 176.579 kb on + strand, within PGA1_c01930 at 176.651 kb on - strand, within PGA1_c01930 at 176.656 kb on + strand, within PGA1_c01930 at 176.789 kb on - strand, within PGA1_c01930 at 176.861 kb on + strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.878 kb on + strand, within PGA1_c01930 at 176.878 kb on + strand, within PGA1_c01930 at 176.878 kb on + strand, within PGA1_c01930 at 176.886 kb on - strand, within PGA1_c01930 at 176.886 kb on - strand, within PGA1_c01930 at 176.900 kb on + strand, within PGA1_c01930 at 177.031 kb on - strand, within PGA1_c01930 at 177.034 kb on + strand, within PGA1_c01930 at 177.074 kb on + strand, within PGA1_c01930 at 177.177 kb on + strand, within PGA1_c01930 at 177.224 kb on + strand, within PGA1_c01930 at 177.233 kb on - strand, within PGA1_c01930 at 177.320 kb on - strand at 177.393 kb on + strand at 177.431 kb on - strand at 177.564 kb on + strand at 177.564 kb on + strand at 177.633 kb on - strand, within PGA1_c01940 at 177.720 kb on + strand, within PGA1_c01940 at 177.720 kb on + strand, within PGA1_c01940 at 177.720 kb on + strand, within PGA1_c01940 at 177.728 kb on - strand, within PGA1_c01940
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 175,117 + PGA1_c01920 0.31 -1.5 175,133 + PGA1_c01920 0.32 -0.9 175,133 + PGA1_c01920 0.32 +0.9 175,133 + PGA1_c01920 0.32 -0.1 175,133 + PGA1_c01920 0.32 -0.9 175,133 + PGA1_c01920 0.32 -1.0 175,133 + PGA1_c01920 0.32 +0.0 175,133 + PGA1_c01920 0.32 +0.0 175,141 - PGA1_c01920 0.33 -1.4 175,141 - PGA1_c01920 0.33 -0.2 175,141 - PGA1_c01920 0.33 -0.6 175,141 - PGA1_c01920 0.33 -0.9 175,141 - PGA1_c01920 0.33 +0.6 175,141 - PGA1_c01920 0.33 +1.2 175,141 - PGA1_c01920 0.33 -2.6 175,141 - PGA1_c01920 0.33 +0.0 175,141 - PGA1_c01920 0.33 +1.8 175,188 + PGA1_c01920 0.36 +1.0 175,259 + PGA1_c01920 0.41 -0.4 175,266 - PGA1_c01920 0.42 -0.9 175,288 - PGA1_c01920 0.43 +2.5 175,310 - PGA1_c01920 0.45 +0.2 175,487 - PGA1_c01920 0.58 -0.1 175,498 - PGA1_c01920 0.58 -0.4 175,529 + PGA1_c01920 0.61 +0.3 175,702 + PGA1_c01920 0.73 -1.5 175,737 + PGA1_c01920 0.75 +0.6 175,738 - PGA1_c01920 0.76 +0.0 175,793 + PGA1_c01920 0.79 -1.6 175,793 + PGA1_c01920 0.79 +0.3 175,801 - PGA1_c01920 0.80 -0.6 175,870 + PGA1_c01920 0.85 -0.4 175,885 - PGA1_c01920 0.86 -1.0 175,928 + PGA1_c01920 0.89 -1.4 175,982 + +0.3 176,042 + -3.5 176,140 - -1.1 176,247 + PGA1_c01930 0.12 -0.4 176,336 - PGA1_c01930 0.19 +0.6 176,336 - PGA1_c01930 0.19 -0.4 176,345 + PGA1_c01930 0.20 -1.2 176,431 - PGA1_c01930 0.26 -0.7 176,506 - PGA1_c01930 0.32 -2.7 176,538 - PGA1_c01930 0.34 +0.0 176,562 + PGA1_c01930 0.36 +0.5 176,562 + PGA1_c01930 0.36 -0.5 176,562 + PGA1_c01930 0.36 -0.3 176,562 + PGA1_c01930 0.36 -0.6 176,562 + PGA1_c01930 0.36 -1.1 176,562 + PGA1_c01930 0.36 -0.7 176,570 - PGA1_c01930 0.37 +0.0 176,570 - PGA1_c01930 0.37 +1.0 176,579 + PGA1_c01930 0.38 -1.0 176,651 - PGA1_c01930 0.43 -1.3 176,656 + PGA1_c01930 0.43 -1.1 176,789 - PGA1_c01930 0.53 -0.6 176,861 + PGA1_c01930 0.59 +0.1 176,869 - PGA1_c01930 0.59 +0.0 176,869 - PGA1_c01930 0.59 +0.2 176,869 - PGA1_c01930 0.59 +0.4 176,869 - PGA1_c01930 0.59 +0.3 176,869 - PGA1_c01930 0.59 -1.0 176,869 - PGA1_c01930 0.59 +0.2 176,869 - PGA1_c01930 0.59 -1.3 176,878 + PGA1_c01930 0.60 +0.3 176,878 + PGA1_c01930 0.60 +0.6 176,878 + PGA1_c01930 0.60 +0.0 176,886 - PGA1_c01930 0.61 -0.3 176,886 - PGA1_c01930 0.61 -1.5 176,900 + PGA1_c01930 0.62 +0.6 177,031 - PGA1_c01930 0.72 -1.4 177,034 + PGA1_c01930 0.72 -0.4 177,074 + PGA1_c01930 0.75 +0.3 177,177 + PGA1_c01930 0.83 +0.2 177,224 + PGA1_c01930 0.86 -0.7 177,233 - PGA1_c01930 0.87 -0.0 177,320 - +0.4 177,393 + +0.0 177,431 - +0.8 177,564 + -0.7 177,564 + -0.2 177,633 - PGA1_c01940 0.24 -1.8 177,720 + PGA1_c01940 0.47 -0.5 177,720 + PGA1_c01940 0.47 -0.4 177,720 + PGA1_c01940 0.47 -2.2 177,728 - PGA1_c01940 0.49 -1.6
Or see this region's nucleotide sequence