Strain Fitness in Marinobacter adhaerens HP15 around HP15_1549

Experiment: pyruvate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1547 and HP15_1548 are separated by 37 nucleotidesHP15_1548 and HP15_1549 are separated by 3 nucleotidesHP15_1549 and HP15_1550 overlap by 1 nucleotidesHP15_1550 and HP15_1551 are separated by 20 nucleotides HP15_1547: HP15_1547 - response regulator receiver modulated CheW protein, at 1,630,241 to 1,631,170 _1547 HP15_1548: HP15_1548 - chemotaxis protein methyltransferase CheR, at 1,631,208 to 1,632,035 _1548 HP15_1549: HP15_1549 - major facilitator superfamily MFS_1, at 1,632,039 to 1,633,235 _1549 HP15_1550: HP15_1550 - protein/domain typically associated with flavoprotein oxygenase, DIM6/NTAB family protein, at 1,633,235 to 1,633,852 _1550 HP15_1551: HP15_1551 - transcriptional Regulator, LysR family protein, at 1,633,873 to 1,634,772 _1551 Position (kb) 1632 1633 1634Strain fitness (log2 ratio) -2 -1 0 1at 1631.079 kb on + strandat 1631.164 kb on + strandat 1631.295 kb on - strand, within HP15_1548at 1631.536 kb on - strand, within HP15_1548at 1631.931 kb on - strand, within HP15_1548at 1632.200 kb on - strand, within HP15_1549at 1632.217 kb on + strand, within HP15_1549at 1632.225 kb on - strand, within HP15_1549at 1632.303 kb on - strand, within HP15_1549at 1632.310 kb on - strand, within HP15_1549at 1632.310 kb on - strand, within HP15_1549at 1632.665 kb on + strand, within HP15_1549at 1632.683 kb on - strand, within HP15_1549at 1632.690 kb on + strand, within HP15_1549at 1632.765 kb on - strand, within HP15_1549at 1632.824 kb on + strand, within HP15_1549at 1633.143 kb on + strandat 1633.254 kb on - strandat 1633.280 kb on + strandat 1633.289 kb on - strandat 1633.544 kb on - strand, within HP15_1550at 1633.621 kb on - strand, within HP15_1550at 1633.765 kb on - strand, within HP15_1550at 1633.863 kb on + strandat 1633.881 kb on + strandat 1633.888 kb on - strandat 1634.010 kb on - strand, within HP15_1551at 1634.064 kb on - strand, within HP15_1551at 1634.123 kb on - strand, within HP15_1551at 1634.216 kb on - strand, within HP15_1551

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate
remove
1,631,079 + -0.2
1,631,164 + -0.1
1,631,295 - HP15_1548 0.11 -0.2
1,631,536 - HP15_1548 0.40 -1.6
1,631,931 - HP15_1548 0.87 +0.5
1,632,200 - HP15_1549 0.13 -0.6
1,632,217 + HP15_1549 0.15 -1.1
1,632,225 - HP15_1549 0.16 -0.2
1,632,303 - HP15_1549 0.22 -0.8
1,632,310 - HP15_1549 0.23 -0.8
1,632,310 - HP15_1549 0.23 -0.4
1,632,665 + HP15_1549 0.52 -0.3
1,632,683 - HP15_1549 0.54 -1.3
1,632,690 + HP15_1549 0.54 -0.4
1,632,765 - HP15_1549 0.61 -1.0
1,632,824 + HP15_1549 0.66 -0.1
1,633,143 + +1.1
1,633,254 - -1.3
1,633,280 + -0.5
1,633,289 - +1.3
1,633,544 - HP15_1550 0.50 -0.8
1,633,621 - HP15_1550 0.62 -0.3
1,633,765 - HP15_1550 0.86 -1.8
1,633,863 + -0.8
1,633,881 + +0.4
1,633,888 - +1.0
1,634,010 - HP15_1551 0.15 -0.5
1,634,064 - HP15_1551 0.21 +0.9
1,634,123 - HP15_1551 0.28 +0.6
1,634,216 - HP15_1551 0.38 +0.3

Or see this region's nucleotide sequence