Strain Fitness in Marinobacter adhaerens HP15 around HP15_1262

Experiment: pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1260 and HP15_1261 overlap by 4 nucleotidesHP15_1261 and HP15_1262 overlap by 4 nucleotidesHP15_1262 and HP15_1263 are separated by 36 nucleotides HP15_1260: HP15_1260 - sugar aldolase, at 1,320,430 to 1,321,056 _1260 HP15_1261: HP15_1261 - acireductone dioxygenase, ARD, at 1,321,053 to 1,321,613 _1261 HP15_1262: HP15_1262 - 2,3-diketo-5-methylthio-1-phosphopentane phosphatase, at 1,321,610 to 1,322,302 _1262 HP15_1263: HP15_1263 - conserved hypothetical protein, at 1,322,339 to 1,323,394 _1263 Position (kb) 1321 1322 1323Strain fitness (log2 ratio) -3 -2 -1 0 1at 1320.695 kb on - strand, within HP15_1260at 1320.695 kb on - strand, within HP15_1260at 1320.706 kb on - strand, within HP15_1260at 1320.715 kb on + strand, within HP15_1260at 1320.791 kb on + strand, within HP15_1260at 1320.791 kb on + strand, within HP15_1260at 1320.955 kb on + strand, within HP15_1260at 1320.963 kb on - strand, within HP15_1260at 1320.997 kb on + strandat 1321.054 kb on + strandat 1321.054 kb on + strandat 1321.106 kb on - strandat 1321.217 kb on + strand, within HP15_1261at 1321.474 kb on + strand, within HP15_1261at 1321.474 kb on + strand, within HP15_1261at 1321.595 kb on + strandat 1322.160 kb on - strand, within HP15_1262at 1322.277 kb on + strandat 1322.523 kb on + strand, within HP15_1263at 1322.543 kb on + strand, within HP15_1263at 1322.755 kb on + strand, within HP15_1263at 1322.835 kb on - strand, within HP15_1263at 1322.836 kb on + strand, within HP15_1263at 1322.844 kb on - strand, within HP15_1263at 1323.027 kb on + strand, within HP15_1263at 1323.167 kb on + strand, within HP15_1263

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate
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1,320,695 - HP15_1260 0.42 +0.1
1,320,695 - HP15_1260 0.42 +0.2
1,320,706 - HP15_1260 0.44 +0.8
1,320,715 + HP15_1260 0.45 -0.3
1,320,791 + HP15_1260 0.58 -0.9
1,320,791 + HP15_1260 0.58 +0.4
1,320,955 + HP15_1260 0.84 +0.2
1,320,963 - HP15_1260 0.85 -0.4
1,320,997 + -0.6
1,321,054 + +0.4
1,321,054 + -0.6
1,321,106 - -1.3
1,321,217 + HP15_1261 0.29 -0.7
1,321,474 + HP15_1261 0.75 +0.0
1,321,474 + HP15_1261 0.75 -0.7
1,321,595 + -0.7
1,322,160 - HP15_1262 0.79 -3.3
1,322,277 + -0.4
1,322,523 + HP15_1263 0.17 +0.1
1,322,543 + HP15_1263 0.19 -0.4
1,322,755 + HP15_1263 0.39 +1.1
1,322,835 - HP15_1263 0.47 +0.6
1,322,836 + HP15_1263 0.47 +0.3
1,322,844 - HP15_1263 0.48 +1.7
1,323,027 + HP15_1263 0.65 +0.3
1,323,167 + HP15_1263 0.78 +0.6

Or see this region's nucleotide sequence