Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003852

Experiment: Epiandrosterone and Ethanols

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Epiandrosterone and Ethanols
3,675,411	+		ABIE53_003257	0.66	-0.5
3,675,411	+		ABIE53_003257	0.66	-0.6
3,675,411	+		ABIE53_003257	0.66	+0.0
3,675,411	+		ABIE53_003257	0.66	-1.1
3,675,412	-		ABIE53_003257	0.67	+1.2
3,675,412	-		ABIE53_003257	0.67	-1.6
3,675,412	-		ABIE53_003257	0.67	-1.1
3,675,412	-		ABIE53_003257	0.67	-0.8
3,675,412	-		ABIE53_003257	0.67	+0.2
3,675,412	-		ABIE53_003257	0.67	-1.1
3,675,412	-		ABIE53_003257	0.67	-1.2
3,675,412	-		ABIE53_003257	0.67	+0.6
3,675,412	-		ABIE53_003257	0.67	-1.5
3,675,412	-		ABIE53_003257	0.67	-0.1
3,675,462	+		ABIE53_003257	0.82	-0.3
3,675,462	+		ABIE53_003257	0.82	+0.4
3,675,463	-		ABIE53_003257	0.83	-0.8
3,675,463	-		ABIE53_003257	0.83	-1.4
3,675,516	+				-0.1
3,675,516	+				+0.9
3,675,516	+				-0.4
3,675,516	+				-0.0
3,675,517	-				+0.8
3,675,517	-				-1.3
3,675,615	+				+0.5
3,675,615	+				-0.1
3,675,616	-				+0.2
3,675,616	-				-0.4
3,675,616	-				-1.2
3,675,616	-				-0.1
3,675,616	-				+1.2
3,675,616	-				-2.1
3,675,616	-				-0.4
3,675,624	+				+1.0
3,675,624	+				-0.3
3,675,624	+				+0.3
3,675,624	+				-0.1
3,675,624	+				+0.5
3,675,624	+				+0.4
3,675,624	+				+2.2
3,675,625	-				+1.8
3,675,625	-				-0.6
3,675,625	-				-2.0
3,675,625	-				-0.3
3,675,625	-				+0.2
3,675,625	-				-1.8
3,675,625	-				-2.2
3,675,625	-				-2.2
3,675,625	-				-2.1
3,675,625	-				-1.2
3,675,625	-				-2.9
3,675,625	-				-0.4
3,675,740	+				+0.6
3,675,740	+				-1.0
3,675,740	+				+1.2
3,675,740	+				+0.2
3,675,740	+				-0.4
3,675,740	+				+0.2
3,675,740	+				-1.1
3,675,740	+				-0.2
3,675,740	+				-0.9
3,675,741	-				-1.5
3,675,741	-				-0.8
3,675,741	-				-1.5
3,675,741	-				-3.8
3,675,741	-				+0.2
3,675,741	-				-1.1
3,675,741	-				-1.5
3,675,741	-				-2.2
3,675,741	-				-0.4
3,675,741	-				-2.2
3,675,741	-				-3.8
3,675,741	-				-1.6
3,675,741	-				-0.8
3,675,784	+				-1.6
3,675,784	+				-2.3
3,675,784	+				-1.2
3,675,785	-				-1.1
3,675,785	-				-2.1
3,675,785	-				-0.4
3,675,785	-				-1.0
3,675,854	+		ABIE53_003258	0.18	-0.1
3,675,854	+		ABIE53_003258	0.18	-1.7
3,675,854	+		ABIE53_003258	0.18	-1.6
3,675,855	-		ABIE53_003258	0.18	-1.8
3,675,855	-		ABIE53_003258	0.18	-2.3
3,675,855	-		ABIE53_003258	0.18	-0.7
3,675,855	-		ABIE53_003258	0.18	-2.8
3,675,855	-		ABIE53_003258	0.18	+1.2
3,675,855	-		ABIE53_003258	0.18	-0.6
3,675,983	+		ABIE53_003258	0.41	-1.1
3,675,983	+		ABIE53_003258	0.41	-1.7
3,675,983	+		ABIE53_003258	0.41	-2.1
3,675,983	+		ABIE53_003258	0.41	-1.1
3,675,983	+		ABIE53_003258	0.41	-0.9
3,675,983	+		ABIE53_003258	0.41	-2.0
3,675,983	+		ABIE53_003258	0.41	-2.2
3,675,983	+		ABIE53_003258	0.41	-1.9
3,675,983	+		ABIE53_003258	0.41	-0.5
3,675,983	+		ABIE53_003258	0.41	-1.0
3,675,983	+		ABIE53_003258	0.41	-2.8
3,675,983	+		ABIE53_003258	0.41	+0.0
3,675,983	+		ABIE53_003258	0.41	-1.2
3,675,984	-		ABIE53_003258	0.41	-2.4
3,675,984	-		ABIE53_003258	0.41	-2.6
3,675,984	-		ABIE53_003258	0.41	-2.0
3,675,984	-		ABIE53_003258	0.41	-0.9
3,675,984	-		ABIE53_003258	0.41	-1.0
3,675,984	-		ABIE53_003258	0.41	-0.8
3,675,984	-		ABIE53_003258	0.41	+1.2
3,675,984	-		ABIE53_003258	0.41	-0.6
3,675,984	-		ABIE53_003258	0.41	-1.8
3,675,984	-		ABIE53_003258	0.41	-1.7
3,675,984	-		ABIE53_003258	0.41	-1.6
3,676,160	+		ABIE53_003258	0.72	-1.1
3,676,160	+		ABIE53_003258	0.72	-2.2
3,676,161	-		ABIE53_003258	0.73	-0.5
3,676,161	-		ABIE53_003258	0.73	-1.8
3,676,161	-		ABIE53_003258	0.73	-2.8
3,676,161	-		ABIE53_003258	0.73	-1.8
3,676,301	+				-1.9
3,676,301	+				+0.2
3,676,301	+				+0.0
3,676,301	+				-0.1
3,676,301	+				+0.2
3,676,301	+				-1.8
3,676,301	+				-1.2
3,676,301	+				-0.7
3,676,301	+				-0.9
3,676,301	+				-0.4
3,676,301	+				+0.0
3,676,301	+				-0.5
3,676,301	+				-0.6
3,676,301	+				+0.2
3,676,301	+				-0.6
3,676,301	+				+0.4
3,676,301	+				-0.2
3,676,301	+				-0.6
3,676,301	+				-0.6
3,676,302	-				-0.5
3,676,302	-				-1.0
3,676,302	-				+1.2
3,676,302	-				-0.9
3,676,302	-				+0.5
3,676,302	-				-1.1
3,676,302	-				-1.6
3,676,302	-				+1.2
3,676,302	-				+0.6
3,676,302	-				-0.4
3,676,340	+				-0.0
3,676,340	+				+0.1
3,676,340	+				-0.7
3,676,340	+				+1.2
3,676,340	+				-0.8
3,676,340	+				-0.5
3,676,340	+				-0.2
3,676,340	+				-0.6
3,676,340	+				-0.4
3,676,340	+				+0.2
3,676,340	+				-0.8
3,676,340	+				-0.4
3,676,340	+				+0.2
3,676,341	-				-0.5
3,676,341	-				-0.7
3,676,341	-				-1.4
3,676,341	-				-0.5
3,676,341	-				+0.2
3,676,341	-				-0.0
3,676,385	+				-1.5
3,676,386	-				-0.5
3,676,390	+				+0.0
3,676,391	-				-0.1
3,676,391	-				-0.4
3,676,411	+		ABIE53_003852	0.14	-0.2
3,676,411	+		ABIE53_003852	0.14	-0.2
3,676,411	+		ABIE53_003852	0.14	+1.6
3,676,411	+		ABIE53_003852	0.14	-0.1
3,676,411	+		ABIE53_003852	0.14	+0.6
3,676,411	+		ABIE53_003852	0.14	+0.2
3,676,411	+		ABIE53_003852	0.14	+0.1
3,676,411	+		ABIE53_003852	0.14	+0.8
3,676,411	+		ABIE53_003852	0.14	+0.5
3,676,411	+		ABIE53_003852	0.14	-0.1
3,676,411	+		ABIE53_003852	0.14	+2.8
3,676,411	+		ABIE53_003852	0.14	-1.0
3,676,412	-		ABIE53_003852	0.15	-0.6
3,676,412	-		ABIE53_003852	0.15	+0.0
3,676,412	-		ABIE53_003852	0.15	+0.1
3,676,412	-		ABIE53_003852	0.15	-2.2
3,676,412	-		ABIE53_003852	0.15	-0.1
3,676,412	-		ABIE53_003852	0.15	-0.5
3,676,412	-		ABIE53_003852	0.15	-1.6
3,676,412	-		ABIE53_003852	0.15	+0.3
3,676,412	-		ABIE53_003852	0.15	-1.1
3,676,412	-		ABIE53_003852	0.15	-1.3
3,676,413	+		ABIE53_003852	0.16	+0.8
3,676,413	+		ABIE53_003852	0.16	-0.1
3,676,413	+		ABIE53_003852	0.16	-1.4
3,676,413	+		ABIE53_003852	0.16	+2.2
3,676,413	+		ABIE53_003852	0.16	-0.2
3,676,413	+		ABIE53_003852	0.16	-0.4
3,676,413	+		ABIE53_003852	0.16	-1.4
3,676,414	-		ABIE53_003852	0.18	-1.3
3,676,414	-		ABIE53_003852	0.18	-3.0
3,676,419	+		ABIE53_003852	0.24	+0.5
3,676,419	+		ABIE53_003852	0.24	-0.6
3,676,419	+		ABIE53_003852	0.24	-1.0
3,676,419	+		ABIE53_003852	0.24	+0.2
3,676,419	+		ABIE53_003852	0.24	+0.7
3,676,419	+		ABIE53_003852	0.24	-0.1
3,676,419	+		ABIE53_003852	0.24	+2.8
3,676,419	+		ABIE53_003852	0.24	+0.5
3,676,419	+		ABIE53_003852	0.24	+0.6
3,676,419	+		ABIE53_003852	0.24	-0.5
3,676,419	+		ABIE53_003852	0.24	-0.5
3,676,420	-		ABIE53_003852	0.26	-1.5
3,676,420	-		ABIE53_003852	0.26	-0.6
3,676,420	-		ABIE53_003852	0.26	+0.3
3,676,422	+		ABIE53_003852	0.28	+0.4
3,676,422	+		ABIE53_003852	0.28	-1.4
3,676,422	+		ABIE53_003852	0.28	+1.8
3,676,422	+		ABIE53_003852	0.28	+0.4
3,676,422	+		ABIE53_003852	0.28	+0.4
3,676,422	+		ABIE53_003852	0.28	-0.5
3,676,422	+		ABIE53_003852	0.28	+1.0
3,676,423	-		ABIE53_003852	0.30	-0.5
3,676,423	-		ABIE53_003852	0.30	-0.4
3,676,423	-		ABIE53_003852	0.30	-1.2
3,676,423	-		ABIE53_003852	0.30	-1.3
3,676,427	+		ABIE53_003852	0.35	-0.6
3,676,427	+		ABIE53_003852	0.35	-0.7
3,676,427	+		ABIE53_003852	0.35	+0.8
3,676,427	+		ABIE53_003852	0.35	-0.8
3,676,427	+		ABIE53_003852	0.35	+0.1
3,676,428	-		ABIE53_003852	0.36	-0.9
3,676,428	-		ABIE53_003852	0.36	-0.4
3,676,428	-		ABIE53_003852	0.36	-0.8
3,676,428	-		ABIE53_003852	0.36	-0.6
3,676,440	+		ABIE53_003852	0.53	-2.1
3,676,441	-		ABIE53_003852	0.54	-2.1
3,676,441	-		ABIE53_003852	0.54	-2.0
3,676,477	+				-0.1
3,676,477	+				-0.0
3,676,477	+				+0.4
3,676,477	+				-0.0
3,676,478	-				-1.1
3,676,522	+				+0.4
3,676,522	+				+1.6
3,676,523	-				-1.4
3,676,523	-				-1.6
3,676,594	+		ABIE53_003259	0.19	+0.0
3,676,607	+		ABIE53_003259	0.24	-0.9
3,676,607	+		ABIE53_003259	0.24	-1.4
3,676,607	+		ABIE53_003259	0.24	-0.9
3,676,607	+		ABIE53_003259	0.24	-0.0
3,676,607	+		ABIE53_003259	0.24	-2.1
3,676,608	-		ABIE53_003259	0.24	+0.2
3,676,608	-		ABIE53_003259	0.24	-1.8
3,676,608	-		ABIE53_003259	0.24	+0.1
3,676,608	-		ABIE53_003259	0.24	+0.5
3,676,608	-		ABIE53_003259	0.24	-1.0
3,676,608	-		ABIE53_003259	0.24	-1.1
3,676,609	+		ABIE53_003259	0.25	-0.2
3,676,609	+		ABIE53_003259	0.25	-0.7
3,676,609	+		ABIE53_003259	0.25	+1.2
3,676,609	+		ABIE53_003259	0.25	+0.0
3,676,610	-		ABIE53_003259	0.25	-0.4
3,676,610	-		ABIE53_003259	0.25	-0.4
3,676,610	-		ABIE53_003259	0.25	-0.2
3,676,610	-		ABIE53_003259	0.25	-0.9
3,676,610	-		ABIE53_003259	0.25	-0.4
3,676,678	+		ABIE53_003259	0.50	-0.8
3,676,678	+		ABIE53_003259	0.50	-0.3
3,676,678	+		ABIE53_003259	0.50	-0.0
3,676,679	-		ABIE53_003259	0.50	-0.4
3,676,679	-		ABIE53_003259	0.50	-1.1
3,676,783	+		ABIE53_003259	0.88	-1.6
3,676,783	+		ABIE53_003259	0.88	-0.3
3,676,783	+		ABIE53_003259	0.88	-1.2
3,676,783	+		ABIE53_003259	0.88	-0.2
3,676,783	+		ABIE53_003259	0.88	-0.4
3,676,783	+		ABIE53_003259	0.88	-0.4
3,676,783	+		ABIE53_003259	0.88	+0.4
3,676,784	-		ABIE53_003259	0.89	-1.0
3,676,784	-		ABIE53_003259	0.89	-1.3
3,676,784	-		ABIE53_003259	0.89	-1.7
3,676,784	-		ABIE53_003259	0.89	-0.8
3,676,841	+				+0.2
3,676,842	-				-0.5
3,676,946	-				-2.3
3,676,970	+				-1.4
3,676,970	+				+0.0
3,676,970	+				-1.4
3,676,970	+				+0.4
3,676,971	-				-0.4
3,676,971	-				-0.1
3,676,981	+				-1.2
3,676,982	-				-0.5
3,676,990	+				+1.8
3,676,990	+				-1.2
3,676,990	+				-0.0
3,676,990	+				+0.2
3,676,991	-				-1.6
3,676,991	-				-0.9
3,677,017	+				-1.8
3,677,017	+				-0.8
3,677,017	+				-0.6
3,677,017	+				+0.4
3,677,018	-				+0.8
3,677,018	-				-2.5
3,677,018	-				+0.5
3,677,018	-				+0.3
3,677,018	-				-0.2
3,677,083	+				-0.4
3,677,083	+				+0.6
3,677,083	+				-0.4
3,677,084	-				-0.4
3,677,084	-				+0.8
3,677,084	-				-0.7
3,677,084	-				+0.2
3,677,084	-				-0.4
3,677,088	+				-0.3
3,677,089	-				+0.6
3,677,089	-				-0.7
3,677,089	-				+0.7
3,677,175	+				-0.4
3,677,176	-				-0.1
3,677,176	-				+1.0
3,677,177	+				-2.2
3,677,177	+				-0.1
3,677,178	-				-1.6
3,677,248	+				-0.1
3,677,248	+				-0.1
3,677,248	+				+0.1
3,677,248	+				-1.0
3,677,248	+				-0.4
3,677,248	+				-1.2
3,677,248	+				-0.2
3,677,248	+				+0.1
3,677,248	+				-0.1
3,677,248	+				+0.2
3,677,248	+				-2.4
3,677,249	-				-0.3
3,677,249	-				+1.8
3,677,249	-				+1.2
3,677,249	-				+1.2
3,677,249	-				-0.5
3,677,249	-				+0.1
3,677,249	-				+1.5
3,677,249	-				-1.1
3,677,249	-				-1.6
3,677,249	-				-0.1
3,677,249	-				-0.1
3,677,349	+				+0.2
3,677,349	+				-2.0
3,677,349	+				-0.8
3,677,349	+				+0.2
3,677,349	+				-0.3
3,677,349	+				-0.4
3,677,349	+				-0.4
3,677,349	+				+0.3
3,677,349	+				+1.5
3,677,349	+				-0.7
3,677,349	+				+0.9
3,677,349	+				+2.2
3,677,349	+				+1.0
3,677,349	+				-1.4
3,677,349	+				+0.6
3,677,350	-				+0.8
3,677,350	-				+0.9
3,677,350	-				+0.6
3,677,350	-				-0.2
3,677,350	-				-0.8
3,677,350	-				+0.2
3,677,350	-				+1.5
3,677,350	-				+1.0
3,677,350	-				+0.5
3,677,350	-				+0.3
3,677,350	-				+3.2