Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000788

Experiment: Epiandrosterone and Ethanols

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000787 and ABIE53_000788 are separated by 123 nucleotidesABIE53_000788 and ABIE53_000789 are separated by 178 nucleotides ABIE53_000787: ABIE53_000787 - FdhD protein, at 852,499 to 853,326 _000787 ABIE53_000788: ABIE53_000788 - hypothetical protein, at 853,450 to 853,926 _000788 ABIE53_000789: ABIE53_000789 - PAS domain S-box-containing protein, at 854,105 to 856,435 _000789 Position (kb) 853 854Strain fitness (log2 ratio) -2 -1 0 1 2at 852.518 kb on + strandat 852.518 kb on + strandat 852.518 kb on + strandat 852.519 kb on - strandat 852.519 kb on - strandat 852.527 kb on + strandat 852.527 kb on + strandat 852.527 kb on + strandat 852.527 kb on + strandat 852.527 kb on + strandat 852.527 kb on + strandat 852.528 kb on - strandat 852.528 kb on - strandat 852.659 kb on + strand, within ABIE53_000787at 852.659 kb on + strand, within ABIE53_000787at 852.659 kb on + strand, within ABIE53_000787at 852.659 kb on + strand, within ABIE53_000787at 852.660 kb on - strand, within ABIE53_000787at 852.660 kb on - strand, within ABIE53_000787at 852.660 kb on - strand, within ABIE53_000787at 852.660 kb on - strand, within ABIE53_000787at 852.660 kb on - strand, within ABIE53_000787at 852.660 kb on - strand, within ABIE53_000787at 852.660 kb on - strand, within ABIE53_000787at 852.660 kb on - strand, within ABIE53_000787at 852.660 kb on - strand, within ABIE53_000787at 852.660 kb on - strand, within ABIE53_000787at 852.660 kb on - strand, within ABIE53_000787at 853.388 kb on + strandat 853.388 kb on + strandat 853.388 kb on + strandat 853.388 kb on + strandat 853.388 kb on + strandat 853.388 kb on + strandat 853.389 kb on - strandat 853.389 kb on - strandat 853.389 kb on - strandat 853.389 kb on - strandat 853.389 kb on - strandat 853.389 kb on - strandat 853.389 kb on - strandat 853.389 kb on - strandat 853.396 kb on + strandat 853.396 kb on + strandat 853.397 kb on - strandat 853.397 kb on - strandat 853.397 kb on - strandat 853.397 kb on - strandat 853.401 kb on + strandat 853.401 kb on + strandat 853.401 kb on + strandat 853.513 kb on + strand, within ABIE53_000788at 853.513 kb on + strand, within ABIE53_000788at 853.513 kb on + strand, within ABIE53_000788at 853.513 kb on + strand, within ABIE53_000788at 853.513 kb on + strand, within ABIE53_000788at 853.513 kb on + strand, within ABIE53_000788at 853.513 kb on + strand, within ABIE53_000788at 853.513 kb on + strand, within ABIE53_000788at 853.513 kb on + strand, within ABIE53_000788at 853.514 kb on - strand, within ABIE53_000788at 853.514 kb on - strand, within ABIE53_000788at 853.514 kb on - strand, within ABIE53_000788at 853.514 kb on - strand, within ABIE53_000788at 853.514 kb on - strand, within ABIE53_000788at 853.514 kb on - strand, within ABIE53_000788at 853.514 kb on - strand, within ABIE53_000788at 853.844 kb on - strand, within ABIE53_000788at 854.024 kb on - strandat 854.024 kb on - strandat 854.142 kb on + strandat 854.142 kb on + strandat 854.142 kb on + strandat 854.142 kb on + strandat 854.143 kb on - strandat 854.143 kb on - strandat 854.143 kb on - strandat 854.143 kb on - strandat 854.537 kb on + strand, within ABIE53_000789at 854.537 kb on + strand, within ABIE53_000789at 854.537 kb on + strand, within ABIE53_000789at 854.537 kb on + strand, within ABIE53_000789at 854.538 kb on - strand, within ABIE53_000789at 854.538 kb on - strand, within ABIE53_000789at 854.819 kb on + strand, within ABIE53_000789at 854.819 kb on + strand, within ABIE53_000789at 854.819 kb on + strand, within ABIE53_000789at 854.819 kb on + strand, within ABIE53_000789at 854.819 kb on + strand, within ABIE53_000789at 854.819 kb on + strand, within ABIE53_000789at 854.819 kb on + strand, within ABIE53_000789at 854.819 kb on + strand, within ABIE53_000789at 854.819 kb on + strand, within ABIE53_000789at 854.819 kb on + strand, within ABIE53_000789at 854.819 kb on + strand, within ABIE53_000789at 854.819 kb on + strand, within ABIE53_000789at 854.820 kb on - strand, within ABIE53_000789at 854.820 kb on - strand, within ABIE53_000789at 854.820 kb on - strand, within ABIE53_000789at 854.820 kb on - strand, within ABIE53_000789at 854.820 kb on - strand, within ABIE53_000789at 854.820 kb on - strand, within ABIE53_000789at 854.820 kb on - strand, within ABIE53_000789at 854.820 kb on - strand, within ABIE53_000789at 854.820 kb on - strand, within ABIE53_000789at 854.820 kb on - strand, within ABIE53_000789at 854.820 kb on - strand, within ABIE53_000789at 854.820 kb on - strand, within ABIE53_000789at 854.820 kb on - strand, within ABIE53_000789at 854.820 kb on - strand, within ABIE53_000789at 854.821 kb on + strand, within ABIE53_000789at 854.821 kb on + strand, within ABIE53_000789at 854.821 kb on + strand, within ABIE53_000789at 854.822 kb on - strand, within ABIE53_000789at 854.879 kb on + strand, within ABIE53_000789at 854.879 kb on + strand, within ABIE53_000789at 854.879 kb on + strand, within ABIE53_000789at 854.879 kb on + strand, within ABIE53_000789at 854.879 kb on + strand, within ABIE53_000789at 854.879 kb on + strand, within ABIE53_000789at 854.880 kb on - strand, within ABIE53_000789at 854.880 kb on - strand, within ABIE53_000789at 854.880 kb on - strand, within ABIE53_000789at 854.886 kb on - strand, within ABIE53_000789

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Per-strain Table

Position Strand Gene LocusTag Fraction Epiandrosterone and Ethanols
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852,518 + -1.3
852,518 + +0.2
852,518 + -1.1
852,519 - -0.9
852,519 - -0.5
852,527 + +0.6
852,527 + -1.0
852,527 + -1.3
852,527 + -0.5
852,527 + -0.0
852,527 + +0.3
852,528 - +0.7
852,528 - -1.0
852,659 + ABIE53_000787 0.19 -2.2
852,659 + ABIE53_000787 0.19 +0.8
852,659 + ABIE53_000787 0.19 -0.0
852,659 + ABIE53_000787 0.19 -0.2
852,660 - ABIE53_000787 0.19 +0.9
852,660 - ABIE53_000787 0.19 +0.3
852,660 - ABIE53_000787 0.19 +0.8
852,660 - ABIE53_000787 0.19 +0.5
852,660 - ABIE53_000787 0.19 +0.5
852,660 - ABIE53_000787 0.19 -0.2
852,660 - ABIE53_000787 0.19 +0.3
852,660 - ABIE53_000787 0.19 +1.3
852,660 - ABIE53_000787 0.19 -0.5
852,660 - ABIE53_000787 0.19 -0.3
852,660 - ABIE53_000787 0.19 +1.3
853,388 + -0.9
853,388 + -0.7
853,388 + +0.3
853,388 + -0.8
853,388 + +0.1
853,388 + +0.0
853,389 - +0.8
853,389 - +0.9
853,389 - -0.1
853,389 - -1.3
853,389 - -0.4
853,389 - -0.5
853,389 - +0.4
853,389 - +0.3
853,396 + +0.7
853,396 + +0.0
853,397 - +1.8
853,397 - -1.1
853,397 - -1.5
853,397 - +1.3
853,401 + -0.7
853,401 + +0.9
853,401 + +0.5
853,513 + ABIE53_000788 0.13 +0.3
853,513 + ABIE53_000788 0.13 -0.7
853,513 + ABIE53_000788 0.13 -0.7
853,513 + ABIE53_000788 0.13 -0.5
853,513 + ABIE53_000788 0.13 +0.1
853,513 + ABIE53_000788 0.13 +0.0
853,513 + ABIE53_000788 0.13 -0.1
853,513 + ABIE53_000788 0.13 -0.3
853,513 + ABIE53_000788 0.13 +0.8
853,514 - ABIE53_000788 0.13 -0.5
853,514 - ABIE53_000788 0.13 -0.7
853,514 - ABIE53_000788 0.13 +0.7
853,514 - ABIE53_000788 0.13 +0.3
853,514 - ABIE53_000788 0.13 +0.3
853,514 - ABIE53_000788 0.13 +1.3
853,514 - ABIE53_000788 0.13 -0.9
853,844 - ABIE53_000788 0.83 -1.3
854,024 - +0.4
854,024 - -1.0
854,142 + +1.1
854,142 + +0.3
854,142 + +0.5
854,142 + -0.6
854,143 - +0.5
854,143 - +1.3
854,143 - +0.1
854,143 - +0.6
854,537 + ABIE53_000789 0.19 +1.9
854,537 + ABIE53_000789 0.19 -1.9
854,537 + ABIE53_000789 0.19 -0.1
854,537 + ABIE53_000789 0.19 +0.1
854,538 - ABIE53_000789 0.19 +0.7
854,538 - ABIE53_000789 0.19 -0.6
854,819 + ABIE53_000789 0.31 +2.1
854,819 + ABIE53_000789 0.31 -0.0
854,819 + ABIE53_000789 0.31 -0.4
854,819 + ABIE53_000789 0.31 +0.6
854,819 + ABIE53_000789 0.31 -0.0
854,819 + ABIE53_000789 0.31 +0.7
854,819 + ABIE53_000789 0.31 +0.3
854,819 + ABIE53_000789 0.31 +0.3
854,819 + ABIE53_000789 0.31 -0.5
854,819 + ABIE53_000789 0.31 -0.3
854,819 + ABIE53_000789 0.31 -1.5
854,819 + ABIE53_000789 0.31 -0.3
854,820 - ABIE53_000789 0.31 +0.4
854,820 - ABIE53_000789 0.31 +0.2
854,820 - ABIE53_000789 0.31 +0.7
854,820 - ABIE53_000789 0.31 -1.0
854,820 - ABIE53_000789 0.31 +0.4
854,820 - ABIE53_000789 0.31 -0.0
854,820 - ABIE53_000789 0.31 -1.3
854,820 - ABIE53_000789 0.31 +0.7
854,820 - ABIE53_000789 0.31 -0.0
854,820 - ABIE53_000789 0.31 -1.3
854,820 - ABIE53_000789 0.31 +0.1
854,820 - ABIE53_000789 0.31 +0.2
854,820 - ABIE53_000789 0.31 -1.2
854,820 - ABIE53_000789 0.31 +0.2
854,821 + ABIE53_000789 0.31 -0.4
854,821 + ABIE53_000789 0.31 +0.3
854,821 + ABIE53_000789 0.31 -0.3
854,822 - ABIE53_000789 0.31 -0.2
854,879 + ABIE53_000789 0.33 -0.3
854,879 + ABIE53_000789 0.33 +0.3
854,879 + ABIE53_000789 0.33 +0.4
854,879 + ABIE53_000789 0.33 +0.1
854,879 + ABIE53_000789 0.33 -0.6
854,879 + ABIE53_000789 0.33 -2.4
854,880 - ABIE53_000789 0.33 -0.8
854,880 - ABIE53_000789 0.33 +0.4
854,880 - ABIE53_000789 0.33 +0.7
854,886 - ABIE53_000789 0.34 -0.6

Or see this region's nucleotide sequence