Experiment: m.b. syringaldehyde 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3922 and Dshi_3923 are separated by 60 nucleotides Dshi_3923 and Dshi_3924 are separated by 25 nucleotides Dshi_3924 and Dshi_3925 are separated by 65 nucleotides Dshi_3925 and Dshi_3926 are separated by 1 nucleotides
Dshi_3922: Dshi_3922 - transport protein, putative (RefSeq), at 147,270 to 148,109
_3922
Dshi_3923: Dshi_3923 - hypothetical protein (RefSeq), at 148,170 to 148,334
_3923
Dshi_3924: Dshi_3924 - hypothetical protein (RefSeq), at 148,360 to 148,554
_3924
Dshi_3925: Dshi_3925 - peptidase C26 (RefSeq), at 148,620 to 149,342
_3925
Dshi_3926: Dshi_3926 - hypothetical protein (RefSeq), at 149,344 to 150,306
_3926
Position (kb) 148
149 Strain fitness (log2 ratio) -1
0
1 at 147.541 kb on - strand, within Dshi_3922 at 147.675 kb on + strand, within Dshi_3922 at 147.747 kb on - strand, within Dshi_3922 at 147.749 kb on + strand, within Dshi_3922 at 147.765 kb on + strand, within Dshi_3922 at 147.798 kb on + strand, within Dshi_3922 at 147.806 kb on - strand, within Dshi_3922 at 147.815 kb on + strand, within Dshi_3922 at 147.928 kb on - strand, within Dshi_3922 at 147.972 kb on - strand, within Dshi_3922 at 147.979 kb on - strand, within Dshi_3922 at 148.030 kb on - strand at 148.073 kb on - strand at 148.073 kb on - strand at 148.085 kb on - strand at 148.128 kb on - strand at 148.133 kb on + strand at 148.273 kb on - strand, within Dshi_3923 at 148.402 kb on - strand, within Dshi_3924 at 148.402 kb on - strand, within Dshi_3924 at 148.445 kb on - strand, within Dshi_3924 at 148.513 kb on - strand, within Dshi_3924 at 148.601 kb on - strand at 148.601 kb on - strand at 148.637 kb on + strand at 148.803 kb on - strand, within Dshi_3925 at 148.803 kb on - strand, within Dshi_3925 at 148.807 kb on - strand, within Dshi_3925 at 148.873 kb on + strand, within Dshi_3925 at 148.923 kb on + strand, within Dshi_3925 at 149.119 kb on + strand, within Dshi_3925 at 149.246 kb on - strand, within Dshi_3925 at 149.246 kb on - strand, within Dshi_3925 at 149.261 kb on + strand, within Dshi_3925 at 149.307 kb on + strand at 149.337 kb on + strand at 149.337 kb on + strand at 149.382 kb on - strand at 149.461 kb on + strand, within Dshi_3926 at 149.510 kb on + strand, within Dshi_3926
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. syringaldehyde 0.625 mM remove 147,541 - Dshi_3922 0.32 -0.8 147,675 + Dshi_3922 0.48 -0.8 147,747 - Dshi_3922 0.57 -0.1 147,749 + Dshi_3922 0.57 -0.0 147,765 + Dshi_3922 0.59 +0.0 147,798 + Dshi_3922 0.63 +0.3 147,806 - Dshi_3922 0.64 +0.1 147,815 + Dshi_3922 0.65 +0.2 147,928 - Dshi_3922 0.78 -0.6 147,972 - Dshi_3922 0.84 +1.0 147,979 - Dshi_3922 0.84 +0.7 148,030 - -0.5 148,073 - -0.2 148,073 - +0.5 148,085 - -0.8 148,128 - -0.4 148,133 + +0.3 148,273 - Dshi_3923 0.62 -1.6 148,402 - Dshi_3924 0.22 +0.6 148,402 - Dshi_3924 0.22 -0.0 148,445 - Dshi_3924 0.44 -0.2 148,513 - Dshi_3924 0.78 +0.3 148,601 - -0.6 148,601 - +0.6 148,637 + +0.6 148,803 - Dshi_3925 0.25 -0.4 148,803 - Dshi_3925 0.25 -0.1 148,807 - Dshi_3925 0.26 -0.5 148,873 + Dshi_3925 0.35 -0.4 148,923 + Dshi_3925 0.42 +0.6 149,119 + Dshi_3925 0.69 +0.2 149,246 - Dshi_3925 0.87 +0.6 149,246 - Dshi_3925 0.87 +0.4 149,261 + Dshi_3925 0.89 +0.2 149,307 + +0.2 149,337 + -1.1 149,337 + -0.2 149,382 - -0.3 149,461 + Dshi_3926 0.12 -1.1 149,510 + Dshi_3926 0.17 +0.4
Or see this region's nucleotide sequence