Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05499

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05497 and H281DRAFT_05498 overlap by 10 nucleotidesH281DRAFT_05498 and H281DRAFT_05499 are separated by 16 nucleotidesH281DRAFT_05499 and H281DRAFT_05500 are separated by 10 nucleotides H281DRAFT_05497: H281DRAFT_05497 - 3-oxoacyl-[acyl-carrier protein] reductase, at 76,881 to 77,621 _05497 H281DRAFT_05498: H281DRAFT_05498 - branched chain amino acid aminotransferase apoenzyme (EC 2.6.1.42), at 77,612 to 78,538 _05498 H281DRAFT_05499: H281DRAFT_05499 - putative spermidine/putrescine transport system permease protein, at 78,555 to 79,370 _05499 H281DRAFT_05500: H281DRAFT_05500 - putative spermidine/putrescine transport system permease protein, at 79,381 to 80,736 _05500 Position (kb) 78 79 80Strain fitness (log2 ratio) -1 0 1at 77.575 kb on - strandat 78.027 kb on + strand, within H281DRAFT_05498at 78.087 kb on - strand, within H281DRAFT_05498at 78.190 kb on - strand, within H281DRAFT_05498at 78.202 kb on + strand, within H281DRAFT_05498at 78.264 kb on + strand, within H281DRAFT_05498at 78.264 kb on + strand, within H281DRAFT_05498at 78.264 kb on + strand, within H281DRAFT_05498at 78.265 kb on - strand, within H281DRAFT_05498at 78.265 kb on - strand, within H281DRAFT_05498at 78.379 kb on + strand, within H281DRAFT_05498at 78.429 kb on + strand, within H281DRAFT_05498at 78.430 kb on - strand, within H281DRAFT_05498at 78.493 kb on + strandat 78.494 kb on - strandat 78.495 kb on + strandat 78.495 kb on + strandat 78.495 kb on + strandat 78.495 kb on + strandat 78.495 kb on + strandat 78.942 kb on - strand, within H281DRAFT_05499at 79.001 kb on - strand, within H281DRAFT_05499at 79.001 kb on - strand, within H281DRAFT_05499at 79.382 kb on + strandat 79.434 kb on - strandat 79.509 kb on - strandat 79.640 kb on + strand, within H281DRAFT_05500at 79.642 kb on + strand, within H281DRAFT_05500at 79.643 kb on - strand, within H281DRAFT_05500at 79.643 kb on - strand, within H281DRAFT_05500at 79.775 kb on + strand, within H281DRAFT_05500at 79.775 kb on + strand, within H281DRAFT_05500at 79.775 kb on + strand, within H281DRAFT_05500at 79.776 kb on - strand, within H281DRAFT_05500at 79.776 kb on - strand, within H281DRAFT_05500at 79.792 kb on - strand, within H281DRAFT_05500at 79.795 kb on + strand, within H281DRAFT_05500at 80.039 kb on - strand, within H281DRAFT_05500at 80.045 kb on - strand, within H281DRAFT_05500at 80.085 kb on + strand, within H281DRAFT_05500at 80.086 kb on - strandat 80.209 kb on - strand, within H281DRAFT_05500

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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77,575 - +0.4
78,027 + H281DRAFT_05498 0.45 +1.1
78,087 - H281DRAFT_05498 0.51 +0.4
78,190 - H281DRAFT_05498 0.62 -0.1
78,202 + H281DRAFT_05498 0.64 +0.7
78,264 + H281DRAFT_05498 0.70 -1.2
78,264 + H281DRAFT_05498 0.70 +0.5
78,264 + H281DRAFT_05498 0.70 +0.0
78,265 - H281DRAFT_05498 0.70 +0.1
78,265 - H281DRAFT_05498 0.70 +0.1
78,379 + H281DRAFT_05498 0.83 -0.1
78,429 + H281DRAFT_05498 0.88 +0.4
78,430 - H281DRAFT_05498 0.88 -0.3
78,493 + -0.5
78,494 - +0.1
78,495 + +0.4
78,495 + -0.1
78,495 + -0.4
78,495 + -0.2
78,495 + -1.6
78,942 - H281DRAFT_05499 0.47 +1.5
79,001 - H281DRAFT_05499 0.55 +0.1
79,001 - H281DRAFT_05499 0.55 +0.7
79,382 + +0.1
79,434 - -0.7
79,509 - +0.1
79,640 + H281DRAFT_05500 0.19 -0.1
79,642 + H281DRAFT_05500 0.19 -0.2
79,643 - H281DRAFT_05500 0.19 +0.7
79,643 - H281DRAFT_05500 0.19 +0.5
79,775 + H281DRAFT_05500 0.29 -0.3
79,775 + H281DRAFT_05500 0.29 +0.8
79,775 + H281DRAFT_05500 0.29 -0.4
79,776 - H281DRAFT_05500 0.29 +0.8
79,776 - H281DRAFT_05500 0.29 +0.3
79,792 - H281DRAFT_05500 0.30 +0.9
79,795 + H281DRAFT_05500 0.31 +0.2
80,039 - H281DRAFT_05500 0.49 +0.5
80,045 - H281DRAFT_05500 0.49 -0.2
80,085 + H281DRAFT_05500 0.52 +0.8
80,086 - -0.4
80,209 - H281DRAFT_05500 0.61 +0.3

Or see this region's nucleotide sequence