Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05191 and H281DRAFT_05192 are separated by 146 nucleotides H281DRAFT_05192 and H281DRAFT_05193 are separated by 446 nucleotides
H281DRAFT_05191: H281DRAFT_05191 - Tetratricopeptide repeat-containing protein, at 147,576 to 148,811
_05191
H281DRAFT_05192: H281DRAFT_05192 - phage shock protein A (PspA) family protein, at 148,958 to 149,638
_05192
H281DRAFT_05193: H281DRAFT_05193 - hypothetical protein, at 150,085 to 150,717
_05193
Position (kb) 148
149
150 Strain fitness (log2 ratio) -1
0
1 at 148.092 kb on + strand, within H281DRAFT_05191 at 148.167 kb on + strand, within H281DRAFT_05191 at 148.613 kb on - strand, within H281DRAFT_05191 at 148.618 kb on + strand, within H281DRAFT_05191 at 148.619 kb on - strand, within H281DRAFT_05191 at 148.750 kb on - strand at 148.750 kb on - strand at 149.428 kb on - strand, within H281DRAFT_05192 at 149.607 kb on - strand at 149.773 kb on + strand at 149.810 kb on + strand at 149.811 kb on - strand at 149.811 kb on - strand at 149.880 kb on + strand at 149.880 kb on + strand at 149.881 kb on - strand at 149.909 kb on - strand at 149.985 kb on - strand at 150.082 kb on + strand at 150.083 kb on - strand at 150.087 kb on - strand at 150.087 kb on - strand at 150.087 kb on - strand at 150.630 kb on + strand, within H281DRAFT_05193
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 148,092 + H281DRAFT_05191 0.42 -0.2 148,167 + H281DRAFT_05191 0.48 -0.1 148,613 - H281DRAFT_05191 0.84 +0.1 148,618 + H281DRAFT_05191 0.84 +0.4 148,619 - H281DRAFT_05191 0.84 -0.0 148,750 - -0.6 148,750 - +0.5 149,428 - H281DRAFT_05192 0.69 +0.5 149,607 - -0.0 149,773 + -0.3 149,810 + +0.4 149,811 - +0.2 149,811 - -0.3 149,880 + +0.4 149,880 + +0.0 149,881 - -0.2 149,909 - -0.2 149,985 - -0.0 150,082 + -1.2 150,083 - -1.2 150,087 - -0.3 150,087 - +0.4 150,087 - +0.2 150,630 + H281DRAFT_05193 0.86 -0.7
Or see this region's nucleotide sequence