Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04869 and H281DRAFT_04870 are separated by 84 nucleotides H281DRAFT_04870 and H281DRAFT_04871 are separated by 2 nucleotides H281DRAFT_04871 and H281DRAFT_04872 are separated by 64 nucleotides H281DRAFT_04872 and H281DRAFT_04873 are separated by 103 nucleotides
H281DRAFT_04869: H281DRAFT_04869 - imidazolonepropionase, at 11,941 to 13,170
_04869
H281DRAFT_04870: H281DRAFT_04870 - hypothetical protein, at 13,255 to 13,935
_04870
H281DRAFT_04871: H281DRAFT_04871 - urocanate hydratase, at 13,938 to 15,626
_04871
H281DRAFT_04872: H281DRAFT_04872 - transcriptional regulator, histidine utilization repressor, GntR family, at 15,691 to 16,386
_04872
H281DRAFT_04873: H281DRAFT_04873 - histidine ammonia-lyase, at 16,490 to 18,013
_04873
Position (kb) 13
14
15
16 Strain fitness (log2 ratio) -1
0
1 at 13.199 kb on + strand at 13.200 kb on - strand at 13.855 kb on + strand, within H281DRAFT_04870 at 13.882 kb on - strand at 13.882 kb on - strand at 14.385 kb on - strand, within H281DRAFT_04871 at 14.492 kb on - strand, within H281DRAFT_04871 at 14.901 kb on - strand, within H281DRAFT_04871 at 15.197 kb on - strand, within H281DRAFT_04871 at 15.226 kb on + strand, within H281DRAFT_04871 at 15.504 kb on - strand at 15.661 kb on - strand at 16.030 kb on - strand, within H281DRAFT_04872
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 13,199 + +0.1 13,200 - -0.2 13,855 + H281DRAFT_04870 0.88 +0.9 13,882 - -0.7 13,882 - +0.5 14,385 - H281DRAFT_04871 0.26 -0.2 14,492 - H281DRAFT_04871 0.33 +0.4 14,901 - H281DRAFT_04871 0.57 +1.5 15,197 - H281DRAFT_04871 0.75 -0.0 15,226 + H281DRAFT_04871 0.76 +0.4 15,504 - +1.0 15,661 - -0.0 16,030 - H281DRAFT_04872 0.49 -0.1
Or see this region's nucleotide sequence