Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04841

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04840 and H281DRAFT_04841 are separated by 820 nucleotidesH281DRAFT_04841 and H281DRAFT_04842 overlap by 4 nucleotides H281DRAFT_04840: H281DRAFT_04840 - Uncharacterized protein conserved in bacteria, at 278,364 to 279,188 _04840 H281DRAFT_04841: H281DRAFT_04841 - Glycosyltransferase involved in cell wall bisynthesis, at 280,009 to 280,956 _04841 H281DRAFT_04842: H281DRAFT_04842 - hypothetical protein, at 280,953 to 283,577 _04842 Position (kb) 280 281Strain fitness (log2 ratio) -2 -1 0 1 2 3at 279.022 kb on - strand, within H281DRAFT_04840at 279.143 kb on + strandat 279.186 kb on + strandat 279.189 kb on + strandat 279.190 kb on - strandat 279.245 kb on + strandat 279.304 kb on + strandat 279.305 kb on - strandat 279.433 kb on - strandat 279.461 kb on - strandat 279.497 kb on + strandat 279.497 kb on + strandat 279.498 kb on - strandat 279.727 kb on - strandat 279.727 kb on - strandat 279.856 kb on + strandat 279.890 kb on + strandat 279.890 kb on + strandat 279.891 kb on - strandat 279.891 kb on - strandat 279.891 kb on - strandat 279.893 kb on + strandat 279.893 kb on + strandat 279.893 kb on + strandat 279.894 kb on - strandat 279.894 kb on - strandat 279.894 kb on - strandat 279.894 kb on - strandat 279.952 kb on + strandat 279.952 kb on + strandat 279.953 kb on - strandat 279.956 kb on + strandat 279.956 kb on + strandat 279.956 kb on + strandat 279.957 kb on - strandat 280.058 kb on + strandat 280.058 kb on + strandat 280.105 kb on + strand, within H281DRAFT_04841at 280.106 kb on - strand, within H281DRAFT_04841at 280.199 kb on + strand, within H281DRAFT_04841at 280.275 kb on + strand, within H281DRAFT_04841at 280.275 kb on + strand, within H281DRAFT_04841at 280.275 kb on + strand, within H281DRAFT_04841at 280.276 kb on - strand, within H281DRAFT_04841at 280.276 kb on - strand, within H281DRAFT_04841at 280.276 kb on - strand, within H281DRAFT_04841at 280.303 kb on + strand, within H281DRAFT_04841at 280.303 kb on + strand, within H281DRAFT_04841at 280.334 kb on + strand, within H281DRAFT_04841at 280.334 kb on + strand, within H281DRAFT_04841at 280.502 kb on + strand, within H281DRAFT_04841at 280.503 kb on - strand, within H281DRAFT_04841at 280.592 kb on + strand, within H281DRAFT_04841at 280.593 kb on - strandat 280.622 kb on + strand, within H281DRAFT_04841at 280.623 kb on - strand, within H281DRAFT_04841at 280.623 kb on - strand, within H281DRAFT_04841at 280.623 kb on - strand, within H281DRAFT_04841at 280.688 kb on + strand, within H281DRAFT_04841at 280.688 kb on + strand, within H281DRAFT_04841at 280.688 kb on + strand, within H281DRAFT_04841at 280.689 kb on - strand, within H281DRAFT_04841at 280.689 kb on - strand, within H281DRAFT_04841at 280.689 kb on - strand, within H281DRAFT_04841at 280.689 kb on - strand, within H281DRAFT_04841at 280.693 kb on - strand, within H281DRAFT_04841at 280.693 kb on - strand, within H281DRAFT_04841at 280.715 kb on + strand, within H281DRAFT_04841at 280.715 kb on + strand, within H281DRAFT_04841at 280.715 kb on + strand, within H281DRAFT_04841at 280.716 kb on - strand, within H281DRAFT_04841at 280.716 kb on - strand, within H281DRAFT_04841at 280.716 kb on - strand, within H281DRAFT_04841at 280.716 kb on - strand, within H281DRAFT_04841at 280.716 kb on - strand, within H281DRAFT_04841at 280.851 kb on - strand, within H281DRAFT_04841at 280.851 kb on - strand, within H281DRAFT_04841at 280.851 kb on - strand, within H281DRAFT_04841at 280.884 kb on + strandat 280.885 kb on - strandat 280.885 kb on - strandat 280.920 kb on - strandat 280.920 kb on - strandat 280.934 kb on - strandat 280.934 kb on - strandat 280.986 kb on + strandat 281.009 kb on + strandat 281.009 kb on + strandat 281.009 kb on + strandat 281.009 kb on + strandat 281.009 kb on + strandat 281.010 kb on - strandat 281.060 kb on - strandat 281.067 kb on + strandat 281.117 kb on + strandat 281.117 kb on + strandat 281.117 kb on + strandat 281.117 kb on + strandat 281.117 kb on + strandat 281.117 kb on + strandat 281.117 kb on + strandat 281.118 kb on - strandat 281.147 kb on + strandat 281.212 kb on + strandat 281.213 kb on - strandat 281.275 kb on + strand, within H281DRAFT_04842at 281.276 kb on - strand, within H281DRAFT_04842at 281.276 kb on - strand, within H281DRAFT_04842at 281.299 kb on + strand, within H281DRAFT_04842at 281.299 kb on + strand, within H281DRAFT_04842at 281.300 kb on - strand, within H281DRAFT_04842at 281.300 kb on - strand, within H281DRAFT_04842at 281.358 kb on + strand, within H281DRAFT_04842at 281.358 kb on + strand, within H281DRAFT_04842at 281.495 kb on - strand, within H281DRAFT_04842at 281.545 kb on + strand, within H281DRAFT_04842at 281.545 kb on + strand, within H281DRAFT_04842at 281.546 kb on - strand, within H281DRAFT_04842at 281.546 kb on - strand, within H281DRAFT_04842at 281.546 kb on - strand, within H281DRAFT_04842at 281.546 kb on - strand, within H281DRAFT_04842at 281.630 kb on + strand, within H281DRAFT_04842at 281.630 kb on + strand, within H281DRAFT_04842at 281.630 kb on + strand, within H281DRAFT_04842at 281.631 kb on - strand, within H281DRAFT_04842at 281.631 kb on - strand, within H281DRAFT_04842at 281.631 kb on - strand, within H281DRAFT_04842at 281.642 kb on + strand, within H281DRAFT_04842at 281.642 kb on + strand, within H281DRAFT_04842at 281.642 kb on + strand, within H281DRAFT_04842at 281.642 kb on + strand, within H281DRAFT_04842at 281.643 kb on - strand, within H281DRAFT_04842at 281.643 kb on - strand, within H281DRAFT_04842at 281.650 kb on + strand, within H281DRAFT_04842at 281.651 kb on - strand, within H281DRAFT_04842at 281.651 kb on - strand, within H281DRAFT_04842at 281.651 kb on - strand, within H281DRAFT_04842at 281.679 kb on + strand, within H281DRAFT_04842at 281.679 kb on + strand, within H281DRAFT_04842at 281.679 kb on + strand, within H281DRAFT_04842at 281.700 kb on + strand, within H281DRAFT_04842at 281.778 kb on - strand, within H281DRAFT_04842at 281.827 kb on + strand, within H281DRAFT_04842at 281.828 kb on - strand, within H281DRAFT_04842at 281.848 kb on + strand, within H281DRAFT_04842at 281.848 kb on + strand, within H281DRAFT_04842at 281.849 kb on - strand, within H281DRAFT_04842at 281.849 kb on - strand, within H281DRAFT_04842at 281.849 kb on - strand, within H281DRAFT_04842at 281.911 kb on + strand, within H281DRAFT_04842at 281.941 kb on + strand, within H281DRAFT_04842at 281.942 kb on - strand, within H281DRAFT_04842at 281.942 kb on - strand, within H281DRAFT_04842

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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279,022 - H281DRAFT_04840 0.80 +0.4
279,143 + +0.3
279,186 + +0.2
279,189 + -0.6
279,190 - +0.5
279,245 + +0.4
279,304 + -0.2
279,305 - -0.1
279,433 - +0.4
279,461 - -0.2
279,497 + +0.7
279,497 + +0.1
279,498 - +0.9
279,727 - +0.4
279,727 - +0.1
279,856 + -0.2
279,890 + +0.6
279,890 + +0.3
279,891 - +0.4
279,891 - -1.2
279,891 - +0.4
279,893 + -0.4
279,893 + +0.4
279,893 + -0.1
279,894 - -0.3
279,894 - -0.1
279,894 - +0.3
279,894 - -0.0
279,952 + +0.8
279,952 + +0.7
279,953 - +0.2
279,956 + +0.5
279,956 + -0.3
279,956 + -0.7
279,957 - +0.0
280,058 + +0.3
280,058 + +0.2
280,105 + H281DRAFT_04841 0.10 +0.1
280,106 - H281DRAFT_04841 0.10 +0.4
280,199 + H281DRAFT_04841 0.20 -0.9
280,275 + H281DRAFT_04841 0.28 -0.1
280,275 + H281DRAFT_04841 0.28 +0.2
280,275 + H281DRAFT_04841 0.28 -0.3
280,276 - H281DRAFT_04841 0.28 -0.7
280,276 - H281DRAFT_04841 0.28 +0.1
280,276 - H281DRAFT_04841 0.28 +1.0
280,303 + H281DRAFT_04841 0.31 +0.0
280,303 + H281DRAFT_04841 0.31 +0.6
280,334 + H281DRAFT_04841 0.34 +0.6
280,334 + H281DRAFT_04841 0.34 +0.2
280,502 + H281DRAFT_04841 0.52 +0.2
280,503 - H281DRAFT_04841 0.52 +0.2
280,592 + H281DRAFT_04841 0.61 -1.0
280,593 - +2.8
280,622 + H281DRAFT_04841 0.65 +0.6
280,623 - H281DRAFT_04841 0.65 +0.1
280,623 - H281DRAFT_04841 0.65 +0.5
280,623 - H281DRAFT_04841 0.65 +0.2
280,688 + H281DRAFT_04841 0.72 +0.1
280,688 + H281DRAFT_04841 0.72 +0.2
280,688 + H281DRAFT_04841 0.72 -0.3
280,689 - H281DRAFT_04841 0.72 -1.1
280,689 - H281DRAFT_04841 0.72 +0.4
280,689 - H281DRAFT_04841 0.72 -1.7
280,689 - H281DRAFT_04841 0.72 +0.3
280,693 - H281DRAFT_04841 0.72 -0.1
280,693 - H281DRAFT_04841 0.72 +1.0
280,715 + H281DRAFT_04841 0.74 +0.3
280,715 + H281DRAFT_04841 0.74 +0.2
280,715 + H281DRAFT_04841 0.74 +0.7
280,716 - H281DRAFT_04841 0.75 -0.3
280,716 - H281DRAFT_04841 0.75 -0.3
280,716 - H281DRAFT_04841 0.75 +0.5
280,716 - H281DRAFT_04841 0.75 -0.6
280,716 - H281DRAFT_04841 0.75 +0.5
280,851 - H281DRAFT_04841 0.89 -0.5
280,851 - H281DRAFT_04841 0.89 +0.9
280,851 - H281DRAFT_04841 0.89 +0.4
280,884 + +0.1
280,885 - -0.7
280,885 - +0.2
280,920 - +1.1
280,920 - -0.4
280,934 - +1.2
280,934 - +0.5
280,986 + +0.0
281,009 + -0.0
281,009 + +0.7
281,009 + -1.8
281,009 + +0.6
281,009 + -0.3
281,010 - +0.8
281,060 - +0.6
281,067 + +0.5
281,117 + +1.4
281,117 + +0.6
281,117 + +0.2
281,117 + -0.1
281,117 + -1.8
281,117 + +0.8
281,117 + +0.4
281,118 - -0.6
281,147 + +0.1
281,212 + +0.3
281,213 - -0.3
281,275 + H281DRAFT_04842 0.12 +0.4
281,276 - H281DRAFT_04842 0.12 -1.4
281,276 - H281DRAFT_04842 0.12 +0.3
281,299 + H281DRAFT_04842 0.13 +0.3
281,299 + H281DRAFT_04842 0.13 +0.8
281,300 - H281DRAFT_04842 0.13 -0.2
281,300 - H281DRAFT_04842 0.13 +0.5
281,358 + H281DRAFT_04842 0.15 -0.2
281,358 + H281DRAFT_04842 0.15 +0.5
281,495 - H281DRAFT_04842 0.21 +1.0
281,545 + H281DRAFT_04842 0.23 +0.6
281,545 + H281DRAFT_04842 0.23 +0.4
281,546 - H281DRAFT_04842 0.23 +0.1
281,546 - H281DRAFT_04842 0.23 +0.4
281,546 - H281DRAFT_04842 0.23 +0.2
281,546 - H281DRAFT_04842 0.23 +0.1
281,630 + H281DRAFT_04842 0.26 +0.0
281,630 + H281DRAFT_04842 0.26 -1.2
281,630 + H281DRAFT_04842 0.26 +1.0
281,631 - H281DRAFT_04842 0.26 +0.6
281,631 - H281DRAFT_04842 0.26 +0.7
281,631 - H281DRAFT_04842 0.26 +0.6
281,642 + H281DRAFT_04842 0.26 +0.9
281,642 + H281DRAFT_04842 0.26 -0.1
281,642 + H281DRAFT_04842 0.26 -0.5
281,642 + H281DRAFT_04842 0.26 +0.1
281,643 - H281DRAFT_04842 0.26 +0.2
281,643 - H281DRAFT_04842 0.26 +0.3
281,650 + H281DRAFT_04842 0.27 -0.0
281,651 - H281DRAFT_04842 0.27 +0.4
281,651 - H281DRAFT_04842 0.27 +0.2
281,651 - H281DRAFT_04842 0.27 +0.5
281,679 + H281DRAFT_04842 0.28 -0.2
281,679 + H281DRAFT_04842 0.28 -0.1
281,679 + H281DRAFT_04842 0.28 +0.1
281,700 + H281DRAFT_04842 0.28 +0.3
281,778 - H281DRAFT_04842 0.31 +0.1
281,827 + H281DRAFT_04842 0.33 +0.0
281,828 - H281DRAFT_04842 0.33 -0.0
281,848 + H281DRAFT_04842 0.34 +0.1
281,848 + H281DRAFT_04842 0.34 +0.4
281,849 - H281DRAFT_04842 0.34 +0.3
281,849 - H281DRAFT_04842 0.34 -0.2
281,849 - H281DRAFT_04842 0.34 +0.7
281,911 + H281DRAFT_04842 0.36 -0.6
281,941 + H281DRAFT_04842 0.38 +0.1
281,942 - H281DRAFT_04842 0.38 -2.3
281,942 - H281DRAFT_04842 0.38 +0.1

Or see this region's nucleotide sequence