Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04665

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04663 and H281DRAFT_04664 are separated by 8 nucleotidesH281DRAFT_04664 and H281DRAFT_04665 are separated by 63 nucleotidesH281DRAFT_04665 and H281DRAFT_04666 are separated by 320 nucleotides H281DRAFT_04663: H281DRAFT_04663 - cytochrome b561, at 65,347 to 65,907 _04663 H281DRAFT_04664: H281DRAFT_04664 - Polyisoprenoid-binding protein YceI, at 65,916 to 66,479 _04664 H281DRAFT_04665: H281DRAFT_04665 - Polyisoprenoid-binding protein YceI, at 66,543 to 67,115 _04665 H281DRAFT_04666: H281DRAFT_04666 - MFS transporter, MHS family, proline/betaine transporter, at 67,436 to 68,713 _04666 Position (kb) 66 67 68Strain fitness (log2 ratio) -1 0 1at 65.647 kb on + strand, within H281DRAFT_04663at 65.648 kb on - strand, within H281DRAFT_04663at 65.651 kb on + strand, within H281DRAFT_04663at 65.651 kb on + strand, within H281DRAFT_04663at 65.652 kb on - strand, within H281DRAFT_04663at 65.652 kb on - strand, within H281DRAFT_04663at 65.652 kb on - strand, within H281DRAFT_04663at 65.652 kb on - strand, within H281DRAFT_04663at 65.652 kb on - strand, within H281DRAFT_04663at 65.652 kb on - strand, within H281DRAFT_04663at 65.686 kb on + strand, within H281DRAFT_04663at 65.686 kb on + strand, within H281DRAFT_04663at 65.687 kb on - strand, within H281DRAFT_04663at 65.803 kb on + strand, within H281DRAFT_04663at 65.804 kb on - strand, within H281DRAFT_04663at 65.804 kb on - strand, within H281DRAFT_04663at 65.804 kb on - strand, within H281DRAFT_04663at 65.834 kb on + strand, within H281DRAFT_04663at 65.834 kb on + strand, within H281DRAFT_04663at 65.905 kb on + strandat 65.906 kb on - strandat 65.906 kb on - strandat 65.932 kb on - strandat 65.938 kb on - strandat 65.940 kb on - strandat 66.147 kb on + strand, within H281DRAFT_04664at 66.147 kb on + strand, within H281DRAFT_04664at 66.147 kb on + strand, within H281DRAFT_04664at 66.148 kb on - strand, within H281DRAFT_04664at 66.168 kb on + strand, within H281DRAFT_04664at 66.169 kb on - strand, within H281DRAFT_04664at 66.169 kb on - strand, within H281DRAFT_04664at 66.169 kb on - strand, within H281DRAFT_04664at 66.169 kb on - strand, within H281DRAFT_04664at 66.213 kb on + strand, within H281DRAFT_04664at 66.473 kb on + strandat 66.474 kb on - strandat 66.477 kb on + strandat 66.609 kb on + strand, within H281DRAFT_04665at 66.609 kb on + strand, within H281DRAFT_04665at 66.610 kb on - strand, within H281DRAFT_04665at 66.610 kb on - strand, within H281DRAFT_04665at 66.849 kb on + strand, within H281DRAFT_04665at 66.849 kb on + strand, within H281DRAFT_04665at 66.850 kb on - strand, within H281DRAFT_04665at 67.057 kb on - strand, within H281DRAFT_04665at 67.068 kb on - strandat 67.208 kb on + strandat 67.208 kb on + strandat 67.209 kb on - strandat 67.211 kb on - strandat 67.302 kb on + strandat 67.340 kb on + strandat 67.409 kb on + strandat 67.409 kb on + strandat 67.409 kb on + strandat 67.545 kb on - strandat 67.679 kb on + strand, within H281DRAFT_04666at 67.680 kb on - strand, within H281DRAFT_04666at 67.769 kb on + strand, within H281DRAFT_04666at 67.936 kb on + strand, within H281DRAFT_04666at 68.057 kb on + strand, within H281DRAFT_04666at 68.058 kb on - strand, within H281DRAFT_04666

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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65,647 + H281DRAFT_04663 0.53 +0.1
65,648 - H281DRAFT_04663 0.54 +0.0
65,651 + H281DRAFT_04663 0.54 +0.3
65,651 + H281DRAFT_04663 0.54 -0.1
65,652 - H281DRAFT_04663 0.54 -0.1
65,652 - H281DRAFT_04663 0.54 -1.7
65,652 - H281DRAFT_04663 0.54 -0.6
65,652 - H281DRAFT_04663 0.54 +0.1
65,652 - H281DRAFT_04663 0.54 -0.7
65,652 - H281DRAFT_04663 0.54 +0.6
65,686 + H281DRAFT_04663 0.60 +0.1
65,686 + H281DRAFT_04663 0.60 +0.9
65,687 - H281DRAFT_04663 0.61 +0.3
65,803 + H281DRAFT_04663 0.81 -0.1
65,804 - H281DRAFT_04663 0.81 -0.2
65,804 - H281DRAFT_04663 0.81 +0.3
65,804 - H281DRAFT_04663 0.81 -0.8
65,834 + H281DRAFT_04663 0.87 -1.3
65,834 + H281DRAFT_04663 0.87 +0.1
65,905 + +0.4
65,906 - -0.3
65,906 - -0.4
65,932 - -0.0
65,938 - -0.8
65,940 - +1.0
66,147 + H281DRAFT_04664 0.41 +0.4
66,147 + H281DRAFT_04664 0.41 -0.2
66,147 + H281DRAFT_04664 0.41 +0.6
66,148 - H281DRAFT_04664 0.41 +0.7
66,168 + H281DRAFT_04664 0.45 -0.2
66,169 - H281DRAFT_04664 0.45 +0.7
66,169 - H281DRAFT_04664 0.45 +0.4
66,169 - H281DRAFT_04664 0.45 +0.3
66,169 - H281DRAFT_04664 0.45 +0.2
66,213 + H281DRAFT_04664 0.53 +0.1
66,473 + +0.3
66,474 - -0.2
66,477 + -1.5
66,609 + H281DRAFT_04665 0.12 -0.1
66,609 + H281DRAFT_04665 0.12 +0.1
66,610 - H281DRAFT_04665 0.12 +1.1
66,610 - H281DRAFT_04665 0.12 +0.7
66,849 + H281DRAFT_04665 0.53 +0.5
66,849 + H281DRAFT_04665 0.53 +0.5
66,850 - H281DRAFT_04665 0.54 +0.7
67,057 - H281DRAFT_04665 0.90 +0.2
67,068 - -0.1
67,208 + -0.1
67,208 + +0.1
67,209 - -0.3
67,211 - +0.3
67,302 + +0.2
67,340 + +0.2
67,409 + +0.3
67,409 + -0.5
67,409 + -0.1
67,545 - -1.1
67,679 + H281DRAFT_04666 0.19 -0.2
67,680 - H281DRAFT_04666 0.19 -1.4
67,769 + H281DRAFT_04666 0.26 -0.3
67,936 + H281DRAFT_04666 0.39 -0.1
68,057 + H281DRAFT_04666 0.49 -0.3
68,058 - H281DRAFT_04666 0.49 +0.1

Or see this region's nucleotide sequence