Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04541 and H281DRAFT_04542 are separated by 67 nucleotides H281DRAFT_04542 and H281DRAFT_04543 are separated by 11 nucleotides H281DRAFT_04543 and H281DRAFT_04544 are separated by 257 nucleotides
H281DRAFT_04541: H281DRAFT_04541 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 274,568 to 275,314
_04541
H281DRAFT_04542: H281DRAFT_04542 - hypothetical protein, at 275,382 to 275,966
_04542
H281DRAFT_04543: H281DRAFT_04543 - transcriptional regulator, TetR family, at 275,978 to 276,691
_04543
H281DRAFT_04544: H281DRAFT_04544 - diacylglycerol kinase (ATP), at 276,949 to 277,620
_04544
Position (kb) 275
276 Strain fitness (log2 ratio) -1
0
1
2 at 274.407 kb on - strand at 274.407 kb on - strand at 274.420 kb on + strand at 274.421 kb on - strand at 274.478 kb on + strand at 274.478 kb on + strand at 274.478 kb on + strand at 274.479 kb on - strand at 274.479 kb on - strand at 274.479 kb on - strand at 274.482 kb on + strand at 274.482 kb on + strand at 274.482 kb on + strand at 274.482 kb on + strand at 274.482 kb on + strand at 274.483 kb on - strand at 274.483 kb on - strand at 274.547 kb on + strand at 274.761 kb on - strand, within H281DRAFT_04541 at 274.854 kb on + strand, within H281DRAFT_04541 at 274.855 kb on - strand, within H281DRAFT_04541 at 274.855 kb on - strand, within H281DRAFT_04541 at 274.993 kb on + strand, within H281DRAFT_04541 at 274.993 kb on + strand, within H281DRAFT_04541 at 274.994 kb on - strand, within H281DRAFT_04541 at 275.217 kb on + strand, within H281DRAFT_04541 at 275.273 kb on + strand at 275.273 kb on + strand at 275.491 kb on + strand, within H281DRAFT_04542 at 275.491 kb on + strand, within H281DRAFT_04542 at 275.552 kb on - strand, within H281DRAFT_04542 at 275.564 kb on + strand, within H281DRAFT_04542 at 275.614 kb on + strand, within H281DRAFT_04542 at 275.615 kb on - strand, within H281DRAFT_04542 at 275.854 kb on + strand, within H281DRAFT_04542 at 275.915 kb on - strand at 275.915 kb on - strand at 275.915 kb on - strand at 275.947 kb on + strand at 276.024 kb on + strand at 276.025 kb on - strand at 276.093 kb on + strand, within H281DRAFT_04543 at 276.093 kb on + strand, within H281DRAFT_04543 at 276.094 kb on - strand, within H281DRAFT_04543 at 276.094 kb on - strand, within H281DRAFT_04543 at 276.119 kb on + strand, within H281DRAFT_04543 at 276.119 kb on + strand, within H281DRAFT_04543 at 276.120 kb on - strand, within H281DRAFT_04543 at 276.125 kb on + strand, within H281DRAFT_04543 at 276.125 kb on + strand, within H281DRAFT_04543 at 276.125 kb on + strand, within H281DRAFT_04543 at 276.125 kb on + strand, within H281DRAFT_04543 at 276.126 kb on - strand, within H281DRAFT_04543 at 276.126 kb on - strand, within H281DRAFT_04543 at 276.126 kb on - strand, within H281DRAFT_04543 at 276.166 kb on - strand, within H281DRAFT_04543 at 276.166 kb on - strand, within H281DRAFT_04543 at 276.204 kb on + strand, within H281DRAFT_04543 at 276.205 kb on - strand, within H281DRAFT_04543 at 276.205 kb on - strand, within H281DRAFT_04543 at 276.213 kb on - strand, within H281DRAFT_04543 at 276.387 kb on + strand, within H281DRAFT_04543 at 276.423 kb on + strand, within H281DRAFT_04543 at 276.423 kb on + strand, within H281DRAFT_04543 at 276.424 kb on - strand, within H281DRAFT_04543 at 276.424 kb on - strand, within H281DRAFT_04543 at 276.424 kb on - strand, within H281DRAFT_04543 at 276.424 kb on - strand at 276.432 kb on + strand, within H281DRAFT_04543 at 276.433 kb on - strand, within H281DRAFT_04543 at 276.748 kb on - strand at 276.769 kb on + strand at 276.792 kb on - strand at 276.807 kb on + strand at 276.810 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 274,407 - +0.2 274,407 - +1.4 274,420 + -0.1 274,421 - +0.0 274,478 + +0.2 274,478 + -0.4 274,478 + +0.0 274,479 - -0.5 274,479 - +0.4 274,479 - -0.4 274,482 + -0.4 274,482 + -1.1 274,482 + +0.4 274,482 + +0.5 274,482 + -0.0 274,483 - -1.4 274,483 - -0.1 274,547 + -0.1 274,761 - H281DRAFT_04541 0.26 -0.1 274,854 + H281DRAFT_04541 0.38 -0.3 274,855 - H281DRAFT_04541 0.38 +1.0 274,855 - H281DRAFT_04541 0.38 -0.2 274,993 + H281DRAFT_04541 0.57 +0.2 274,993 + H281DRAFT_04541 0.57 -0.2 274,994 - H281DRAFT_04541 0.57 -0.6 275,217 + H281DRAFT_04541 0.87 +0.4 275,273 + +0.1 275,273 + -0.1 275,491 + H281DRAFT_04542 0.19 +0.2 275,491 + H281DRAFT_04542 0.19 +0.0 275,552 - H281DRAFT_04542 0.29 +0.0 275,564 + H281DRAFT_04542 0.31 +2.3 275,614 + H281DRAFT_04542 0.40 +0.7 275,615 - H281DRAFT_04542 0.40 -0.0 275,854 + H281DRAFT_04542 0.81 +1.9 275,915 - -0.4 275,915 - -0.1 275,915 - +0.4 275,947 + +0.7 276,024 + +0.0 276,025 - +0.2 276,093 + H281DRAFT_04543 0.16 -0.1 276,093 + H281DRAFT_04543 0.16 -0.9 276,094 - H281DRAFT_04543 0.16 -0.1 276,094 - H281DRAFT_04543 0.16 -0.6 276,119 + H281DRAFT_04543 0.20 +0.5 276,119 + H281DRAFT_04543 0.20 +0.4 276,120 - H281DRAFT_04543 0.20 +0.1 276,125 + H281DRAFT_04543 0.21 -0.3 276,125 + H281DRAFT_04543 0.21 -0.5 276,125 + H281DRAFT_04543 0.21 +0.5 276,125 + H281DRAFT_04543 0.21 -0.4 276,126 - H281DRAFT_04543 0.21 -0.8 276,126 - H281DRAFT_04543 0.21 -0.1 276,126 - H281DRAFT_04543 0.21 -0.7 276,166 - H281DRAFT_04543 0.26 +1.1 276,166 - H281DRAFT_04543 0.26 -0.2 276,204 + H281DRAFT_04543 0.32 -0.8 276,205 - H281DRAFT_04543 0.32 +0.5 276,205 - H281DRAFT_04543 0.32 -0.1 276,213 - H281DRAFT_04543 0.33 -0.6 276,387 + H281DRAFT_04543 0.57 +0.0 276,423 + H281DRAFT_04543 0.62 +0.3 276,423 + H281DRAFT_04543 0.62 -0.4 276,424 - H281DRAFT_04543 0.62 -0.1 276,424 - H281DRAFT_04543 0.62 +0.2 276,424 - H281DRAFT_04543 0.62 +0.4 276,424 - +2.3 276,432 + H281DRAFT_04543 0.64 -0.4 276,433 - H281DRAFT_04543 0.64 +0.1 276,748 - +0.4 276,769 + +0.0 276,792 - -0.8 276,807 + -0.4 276,810 + -0.1
Or see this region's nucleotide sequence