Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04295

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04293 and H281DRAFT_04294 are separated by 38 nucleotidesH281DRAFT_04294 and H281DRAFT_04295 are separated by 146 nucleotidesH281DRAFT_04295 and H281DRAFT_04296 are separated by 91 nucleotidesH281DRAFT_04296 and H281DRAFT_04297 are separated by 114 nucleotides H281DRAFT_04293: H281DRAFT_04293 - 16S rRNA processing protein RimM, at 8,888 to 9,646 _04293 H281DRAFT_04294: H281DRAFT_04294 - tRNA (Guanine37-N(1)-) methyltransferase, at 9,685 to 10,452 _04294 H281DRAFT_04295: H281DRAFT_04295 - LSU ribosomal protein L19P, at 10,599 to 10,985 _04295 H281DRAFT_04296: H281DRAFT_04296 - 8-oxo-dGTP pyrophosphatase MutT, NUDIX family, at 11,077 to 11,793 _04296 H281DRAFT_04297: H281DRAFT_04297 - adenosylcobinamide-phosphate synthase, at 11,908 to 12,846 _04297 Position (kb) 10 11Strain fitness (log2 ratio) -2 -1 0 1 2at 9.641 kb on + strandat 9.647 kb on + strandat 9.647 kb on + strandat 9.647 kb on + strandat 10.984 kb on - strandat 11.241 kb on + strand, within H281DRAFT_04296at 11.337 kb on + strand, within H281DRAFT_04296at 11.337 kb on + strand, within H281DRAFT_04296at 11.482 kb on + strand, within H281DRAFT_04296at 11.517 kb on - strand, within H281DRAFT_04296at 11.576 kb on + strand, within H281DRAFT_04296at 11.577 kb on - strand, within H281DRAFT_04296at 11.732 kb on - strandat 11.863 kb on - strandat 11.869 kb on - strandat 11.979 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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9,641 + +0.1
9,647 + -0.3
9,647 + +0.2
9,647 + -0.2
10,984 - -2.5
11,241 + H281DRAFT_04296 0.23 +0.1
11,337 + H281DRAFT_04296 0.36 -0.5
11,337 + H281DRAFT_04296 0.36 +0.5
11,482 + H281DRAFT_04296 0.56 +1.9
11,517 - H281DRAFT_04296 0.61 +1.9
11,576 + H281DRAFT_04296 0.70 +0.3
11,577 - H281DRAFT_04296 0.70 -2.0
11,732 - +0.3
11,863 - -1.0
11,869 - -1.4
11,979 - -0.9

Or see this region's nucleotide sequence