Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04274 and H281DRAFT_04275 are separated by 84 nucleotides H281DRAFT_04275 and H281DRAFT_04276 are separated by 10 nucleotides H281DRAFT_04276 and H281DRAFT_04277 are separated by 250 nucleotides
H281DRAFT_04274: H281DRAFT_04274 - Adenylosuccinate lyase, at 392,362 to 393,750
_04274
H281DRAFT_04275: H281DRAFT_04275 - gluconate kinase, SKI family, at 393,835 to 394,329
_04275
H281DRAFT_04276: H281DRAFT_04276 - gluconate permease GntT, at 394,340 to 395,725
_04276
H281DRAFT_04277: H281DRAFT_04277 - 2-keto-3-deoxy-phosphogluconate aldolase, at 395,976 to 396,617
_04277
Position (kb) 394
395
396 Strain fitness (log2 ratio) -1
0
1
2 at 393.837 kb on - strand at 393.981 kb on + strand, within H281DRAFT_04275 at 394.028 kb on + strand, within H281DRAFT_04275 at 394.029 kb on - strand, within H281DRAFT_04275 at 394.029 kb on - strand, within H281DRAFT_04275 at 394.103 kb on - strand, within H281DRAFT_04275 at 394.447 kb on - strand at 395.106 kb on + strand, within H281DRAFT_04276 at 395.106 kb on + strand, within H281DRAFT_04276 at 395.147 kb on - strand, within H281DRAFT_04276 at 395.305 kb on + strand, within H281DRAFT_04276 at 395.305 kb on + strand, within H281DRAFT_04276 at 395.417 kb on - strand, within H281DRAFT_04276 at 395.646 kb on + strand at 395.646 kb on + strand at 395.647 kb on - strand at 395.693 kb on + strand at 395.746 kb on + strand at 395.837 kb on - strand at 395.877 kb on + strand at 395.877 kb on + strand at 395.957 kb on + strand at 395.957 kb on + strand at 395.977 kb on + strand at 395.977 kb on + strand at 395.978 kb on - strand at 395.978 kb on - strand at 395.978 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 393,837 - +0.1 393,981 + H281DRAFT_04275 0.29 -0.1 394,028 + H281DRAFT_04275 0.39 -0.0 394,029 - H281DRAFT_04275 0.39 +0.5 394,029 - H281DRAFT_04275 0.39 +0.4 394,103 - H281DRAFT_04275 0.54 +0.0 394,447 - -0.4 395,106 + H281DRAFT_04276 0.55 +0.5 395,106 + H281DRAFT_04276 0.55 +0.2 395,147 - H281DRAFT_04276 0.58 +1.8 395,305 + H281DRAFT_04276 0.70 -0.0 395,305 + H281DRAFT_04276 0.70 +0.5 395,417 - H281DRAFT_04276 0.78 +0.4 395,646 + +0.1 395,646 + +0.6 395,647 - +0.4 395,693 + +0.4 395,746 + +0.3 395,837 - +0.2 395,877 + -0.4 395,877 + +0.4 395,957 + +0.2 395,957 + +0.2 395,977 + +0.1 395,977 + +0.9 395,978 - -0.2 395,978 - -0.4 395,978 - +0.4
Or see this region's nucleotide sequence