Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04171 and H281DRAFT_04172 are separated by 425 nucleotides H281DRAFT_04172 and H281DRAFT_04173 are separated by 219 nucleotides
H281DRAFT_04171: H281DRAFT_04171 - membrane fusion protein, multidrug efflux system, at 287,693 to 288,925
_04171
H281DRAFT_04172: H281DRAFT_04172 - transcriptional regulator, TetR family, at 289,351 to 289,989
_04172
H281DRAFT_04173: H281DRAFT_04173 - Nicotinamidase-related amidase, at 290,209 to 290,835
_04173
Position (kb) 289
290 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 288.354 kb on + strand, within H281DRAFT_04171 at 288.355 kb on - strand, within H281DRAFT_04171 at 288.508 kb on - strand, within H281DRAFT_04171 at 288.633 kb on + strand, within H281DRAFT_04171 at 288.633 kb on + strand, within H281DRAFT_04171 at 288.654 kb on + strand, within H281DRAFT_04171 at 288.785 kb on + strand, within H281DRAFT_04171 at 288.785 kb on + strand, within H281DRAFT_04171 at 288.786 kb on - strand at 288.786 kb on - strand, within H281DRAFT_04171 at 288.791 kb on - strand, within H281DRAFT_04171 at 288.872 kb on + strand at 288.897 kb on - strand at 288.941 kb on + strand at 288.942 kb on - strand at 289.148 kb on + strand at 289.189 kb on + strand at 289.189 kb on + strand at 289.189 kb on + strand at 289.190 kb on - strand at 289.192 kb on + strand at 289.194 kb on + strand at 289.227 kb on + strand at 289.227 kb on + strand at 289.342 kb on + strand at 289.344 kb on + strand at 289.344 kb on + strand at 289.344 kb on + strand at 289.344 kb on + strand at 289.345 kb on - strand at 289.350 kb on + strand at 289.350 kb on + strand at 289.350 kb on + strand at 289.351 kb on - strand at 289.495 kb on + strand, within H281DRAFT_04172 at 289.772 kb on + strand, within H281DRAFT_04172 at 289.772 kb on + strand, within H281DRAFT_04172 at 289.893 kb on - strand, within H281DRAFT_04172 at 290.020 kb on - strand at 290.020 kb on - strand at 290.020 kb on - strand at 290.263 kb on + strand at 290.278 kb on - strand, within H281DRAFT_04173 at 290.347 kb on + strand, within H281DRAFT_04173 at 290.347 kb on + strand, within H281DRAFT_04173 at 290.478 kb on + strand, within H281DRAFT_04173 at 290.489 kb on + strand, within H281DRAFT_04173 at 290.489 kb on + strand, within H281DRAFT_04173 at 290.490 kb on - strand, within H281DRAFT_04173 at 290.582 kb on + strand, within H281DRAFT_04173 at 290.582 kb on + strand, within H281DRAFT_04173 at 290.582 kb on + strand, within H281DRAFT_04173 at 290.583 kb on - strand, within H281DRAFT_04173 at 290.583 kb on - strand, within H281DRAFT_04173 at 290.583 kb on - strand, within H281DRAFT_04173 at 290.782 kb on + strand at 290.786 kb on + strand at 290.786 kb on + strand at 290.787 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 288,354 + H281DRAFT_04171 0.54 -4.5 288,355 - H281DRAFT_04171 0.54 -0.4 288,508 - H281DRAFT_04171 0.66 -2.2 288,633 + H281DRAFT_04171 0.76 +1.4 288,633 + H281DRAFT_04171 0.76 -4.1 288,654 + H281DRAFT_04171 0.78 -1.3 288,785 + H281DRAFT_04171 0.89 -2.6 288,785 + H281DRAFT_04171 0.89 -0.2 288,786 - -1.8 288,786 - H281DRAFT_04171 0.89 -3.3 288,791 - H281DRAFT_04171 0.89 -1.9 288,872 + -0.6 288,897 - -1.0 288,941 + -2.0 288,942 - -2.9 289,148 + -3.2 289,189 + -2.2 289,189 + -2.1 289,189 + -1.8 289,190 - +0.0 289,192 + -2.0 289,194 + +0.2 289,227 + -1.3 289,227 + -2.0 289,342 + -1.1 289,344 + -0.2 289,344 + -0.1 289,344 + -0.3 289,344 + -0.7 289,345 - +0.0 289,350 + -0.7 289,350 + +0.3 289,350 + +0.2 289,351 - +0.5 289,495 + H281DRAFT_04172 0.23 +0.5 289,772 + H281DRAFT_04172 0.66 -0.1 289,772 + H281DRAFT_04172 0.66 +0.4 289,893 - H281DRAFT_04172 0.85 +1.3 290,020 - +0.5 290,020 - +0.1 290,020 - -0.1 290,263 + -0.4 290,278 - H281DRAFT_04173 0.11 +0.3 290,347 + H281DRAFT_04173 0.22 -0.1 290,347 + H281DRAFT_04173 0.22 -0.0 290,478 + H281DRAFT_04173 0.43 +0.3 290,489 + H281DRAFT_04173 0.45 -0.3 290,489 + H281DRAFT_04173 0.45 +0.3 290,490 - H281DRAFT_04173 0.45 -0.6 290,582 + H281DRAFT_04173 0.59 +0.3 290,582 + H281DRAFT_04173 0.59 +0.2 290,582 + H281DRAFT_04173 0.59 -0.4 290,583 - H281DRAFT_04173 0.60 +0.1 290,583 - H281DRAFT_04173 0.60 +0.4 290,583 - H281DRAFT_04173 0.60 -0.2 290,782 + +0.4 290,786 + -0.5 290,786 + -0.0 290,787 - -0.1
Or see this region's nucleotide sequence