Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04028 and H281DRAFT_04029 are separated by 208 nucleotides H281DRAFT_04029 and H281DRAFT_04030 are separated by 368 nucleotides H281DRAFT_04030 and H281DRAFT_04031 are separated by 119 nucleotides
H281DRAFT_04028: H281DRAFT_04028 - threonine dehydratase, at 131,078 to 132,052
_04028
H281DRAFT_04029: H281DRAFT_04029 - hypothetical protein, at 132,261 to 132,575
_04029
H281DRAFT_04030: H281DRAFT_04030 - hypothetical protein, at 132,944 to 133,225
_04030
H281DRAFT_04031: H281DRAFT_04031 - Predicted oxidoreductase, contains short-chain dehydrogenase (SDR) and DUF2520 domains, at 133,345 to 134,286
_04031
Position (kb) 132
133 Strain fitness (log2 ratio) -1
0
1
2 at 131.313 kb on + strand, within H281DRAFT_04028 at 131.314 kb on - strand, within H281DRAFT_04028 at 131.314 kb on - strand, within H281DRAFT_04028 at 131.314 kb on - strand, within H281DRAFT_04028 at 131.513 kb on + strand, within H281DRAFT_04028 at 131.513 kb on + strand, within H281DRAFT_04028 at 131.513 kb on + strand, within H281DRAFT_04028 at 131.513 kb on + strand, within H281DRAFT_04028 at 131.514 kb on - strand, within H281DRAFT_04028 at 131.514 kb on - strand, within H281DRAFT_04028 at 131.514 kb on - strand, within H281DRAFT_04028 at 131.514 kb on - strand, within H281DRAFT_04028 at 131.592 kb on + strand, within H281DRAFT_04028 at 131.659 kb on + strand, within H281DRAFT_04028 at 131.670 kb on + strand, within H281DRAFT_04028 at 131.671 kb on - strand, within H281DRAFT_04028 at 131.679 kb on - strand, within H281DRAFT_04028 at 131.679 kb on - strand, within H281DRAFT_04028 at 131.679 kb on - strand, within H281DRAFT_04028 at 131.679 kb on - strand, within H281DRAFT_04028 at 131.692 kb on - strand, within H281DRAFT_04028 at 131.782 kb on + strand, within H281DRAFT_04028 at 131.808 kb on + strand, within H281DRAFT_04028 at 131.809 kb on - strand, within H281DRAFT_04028 at 131.809 kb on - strand, within H281DRAFT_04028 at 131.861 kb on - strand, within H281DRAFT_04028 at 131.862 kb on + strand, within H281DRAFT_04028 at 131.863 kb on - strand, within H281DRAFT_04028 at 131.863 kb on - strand, within H281DRAFT_04028 at 131.863 kb on - strand, within H281DRAFT_04028 at 131.863 kb on - strand, within H281DRAFT_04028 at 132.141 kb on + strand at 132.180 kb on + strand at 132.181 kb on - strand at 132.188 kb on + strand at 132.206 kb on + strand at 132.263 kb on - strand at 132.272 kb on - strand at 132.272 kb on - strand at 132.298 kb on + strand, within H281DRAFT_04029 at 132.298 kb on + strand, within H281DRAFT_04029 at 132.301 kb on + strand, within H281DRAFT_04029 at 132.314 kb on - strand, within H281DRAFT_04029 at 132.317 kb on - strand, within H281DRAFT_04029 at 132.334 kb on + strand, within H281DRAFT_04029 at 132.334 kb on + strand, within H281DRAFT_04029 at 132.334 kb on + strand, within H281DRAFT_04029 at 132.334 kb on + strand, within H281DRAFT_04029 at 132.335 kb on - strand, within H281DRAFT_04029 at 132.335 kb on - strand at 132.337 kb on + strand, within H281DRAFT_04029 at 132.338 kb on - strand, within H281DRAFT_04029 at 132.338 kb on - strand, within H281DRAFT_04029 at 132.367 kb on + strand, within H281DRAFT_04029 at 132.388 kb on + strand, within H281DRAFT_04029 at 132.413 kb on - strand at 132.416 kb on - strand, within H281DRAFT_04029 at 132.437 kb on - strand, within H281DRAFT_04029 at 132.451 kb on + strand, within H281DRAFT_04029 at 132.452 kb on - strand, within H281DRAFT_04029 at 132.461 kb on - strand, within H281DRAFT_04029 at 132.461 kb on - strand, within H281DRAFT_04029 at 132.537 kb on + strand, within H281DRAFT_04029 at 132.631 kb on + strand at 132.632 kb on - strand at 132.632 kb on - strand at 132.692 kb on + strand at 132.771 kb on - strand at 132.844 kb on + strand at 132.848 kb on + strand at 132.855 kb on + strand at 132.856 kb on - strand at 132.892 kb on - strand at 132.892 kb on - strand at 132.922 kb on + strand at 132.960 kb on + strand at 132.961 kb on - strand at 132.993 kb on + strand, within H281DRAFT_04030 at 132.993 kb on + strand, within H281DRAFT_04030 at 132.994 kb on - strand, within H281DRAFT_04030 at 133.100 kb on - strand at 133.109 kb on - strand, within H281DRAFT_04030 at 133.109 kb on - strand, within H281DRAFT_04030 at 133.147 kb on - strand, within H281DRAFT_04030 at 133.152 kb on + strand, within H281DRAFT_04030 at 133.152 kb on + strand, within H281DRAFT_04030 at 133.152 kb on + strand, within H281DRAFT_04030 at 133.153 kb on - strand, within H281DRAFT_04030 at 133.153 kb on - strand, within H281DRAFT_04030 at 133.304 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 131,313 + H281DRAFT_04028 0.24 +0.0 131,314 - H281DRAFT_04028 0.24 +1.4 131,314 - H281DRAFT_04028 0.24 +0.0 131,314 - H281DRAFT_04028 0.24 +0.1 131,513 + H281DRAFT_04028 0.45 +0.3 131,513 + H281DRAFT_04028 0.45 -0.0 131,513 + H281DRAFT_04028 0.45 +0.1 131,513 + H281DRAFT_04028 0.45 -0.2 131,514 - H281DRAFT_04028 0.45 +0.0 131,514 - H281DRAFT_04028 0.45 +0.2 131,514 - H281DRAFT_04028 0.45 -0.1 131,514 - H281DRAFT_04028 0.45 +0.4 131,592 + H281DRAFT_04028 0.53 +0.2 131,659 + H281DRAFT_04028 0.60 +0.4 131,670 + H281DRAFT_04028 0.61 -1.3 131,671 - H281DRAFT_04028 0.61 +0.5 131,679 - H281DRAFT_04028 0.62 +0.5 131,679 - H281DRAFT_04028 0.62 -0.1 131,679 - H281DRAFT_04028 0.62 +0.8 131,679 - H281DRAFT_04028 0.62 +1.7 131,692 - H281DRAFT_04028 0.63 +0.3 131,782 + H281DRAFT_04028 0.72 -0.3 131,808 + H281DRAFT_04028 0.75 +1.3 131,809 - H281DRAFT_04028 0.75 -0.0 131,809 - H281DRAFT_04028 0.75 +0.2 131,861 - H281DRAFT_04028 0.80 +0.5 131,862 + H281DRAFT_04028 0.80 +0.0 131,863 - H281DRAFT_04028 0.81 -0.1 131,863 - H281DRAFT_04028 0.81 +0.7 131,863 - H281DRAFT_04028 0.81 -0.2 131,863 - H281DRAFT_04028 0.81 +0.5 132,141 + -0.4 132,180 + -0.2 132,181 - -0.3 132,188 + -0.2 132,206 + +2.7 132,263 - +0.3 132,272 - -0.0 132,272 - +0.1 132,298 + H281DRAFT_04029 0.12 +0.3 132,298 + H281DRAFT_04029 0.12 +0.4 132,301 + H281DRAFT_04029 0.13 +0.5 132,314 - H281DRAFT_04029 0.17 +1.0 132,317 - H281DRAFT_04029 0.18 -1.2 132,334 + H281DRAFT_04029 0.23 -0.0 132,334 + H281DRAFT_04029 0.23 -0.5 132,334 + H281DRAFT_04029 0.23 +0.1 132,334 + H281DRAFT_04029 0.23 +0.5 132,335 - H281DRAFT_04029 0.23 +0.4 132,335 - +2.4 132,337 + H281DRAFT_04029 0.24 +0.1 132,338 - H281DRAFT_04029 0.24 +0.4 132,338 - H281DRAFT_04029 0.24 +0.2 132,367 + H281DRAFT_04029 0.34 +0.3 132,388 + H281DRAFT_04029 0.40 +0.6 132,413 - -0.3 132,416 - H281DRAFT_04029 0.49 -1.4 132,437 - H281DRAFT_04029 0.56 +0.3 132,451 + H281DRAFT_04029 0.60 +0.3 132,452 - H281DRAFT_04029 0.61 -0.2 132,461 - H281DRAFT_04029 0.63 +0.3 132,461 - H281DRAFT_04029 0.63 -0.7 132,537 + H281DRAFT_04029 0.88 -0.2 132,631 + +0.1 132,632 - +0.2 132,632 - +0.1 132,692 + -0.2 132,771 - -0.3 132,844 + +0.7 132,848 + +0.1 132,855 + +0.0 132,856 - -0.1 132,892 - -0.1 132,892 - -0.3 132,922 + -0.1 132,960 + +0.4 132,961 - +1.3 132,993 + H281DRAFT_04030 0.17 +0.1 132,993 + H281DRAFT_04030 0.17 -0.0 132,994 - H281DRAFT_04030 0.18 +0.3 133,100 - -0.8 133,109 - H281DRAFT_04030 0.59 +0.8 133,109 - H281DRAFT_04030 0.59 -0.1 133,147 - H281DRAFT_04030 0.72 +0.8 133,152 + H281DRAFT_04030 0.74 +0.2 133,152 + H281DRAFT_04030 0.74 +0.2 133,152 + H281DRAFT_04030 0.74 +0.7 133,153 - H281DRAFT_04030 0.74 +0.6 133,153 - H281DRAFT_04030 0.74 +0.0 133,304 - -0.8
Or see this region's nucleotide sequence