Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03733 and H281DRAFT_03734 overlap by 14 nucleotides H281DRAFT_03734 and H281DRAFT_03735 are separated by 353 nucleotides
H281DRAFT_03733: H281DRAFT_03733 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 247,093 to 248,217
_03733
H281DRAFT_03734: H281DRAFT_03734 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 248,204 to 249,298
_03734
H281DRAFT_03735: H281DRAFT_03735 - diguanylate cyclase/phosphodiesterase, at 249,652 to 251,586
_03735
Position (kb) 248
249
250 Strain fitness (log2 ratio) -1
0
1 at 247.262 kb on + strand, within H281DRAFT_03733 at 248.289 kb on - strand at 248.587 kb on + strand, within H281DRAFT_03734 at 248.838 kb on - strand, within H281DRAFT_03734 at 248.838 kb on - strand, within H281DRAFT_03734 at 249.190 kb on + strand at 249.323 kb on + strand at 249.324 kb on - strand at 249.494 kb on + strand at 249.588 kb on - strand at 249.598 kb on - strand at 249.637 kb on - strand at 249.815 kb on - strand at 249.818 kb on - strand at 249.818 kb on - strand at 249.837 kb on - strand at 249.891 kb on + strand, within H281DRAFT_03735 at 249.960 kb on + strand, within H281DRAFT_03735 at 250.043 kb on + strand, within H281DRAFT_03735 at 250.133 kb on + strand, within H281DRAFT_03735
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 247,262 + H281DRAFT_03733 0.15 +0.1 248,289 - -0.7 248,587 + H281DRAFT_03734 0.35 +0.1 248,838 - H281DRAFT_03734 0.58 +0.9 248,838 - H281DRAFT_03734 0.58 +0.9 249,190 + -0.2 249,323 + -0.6 249,324 - -0.2 249,494 + -0.1 249,588 - +0.3 249,598 - -0.7 249,637 - +0.1 249,815 - +0.3 249,818 - +0.2 249,818 - +0.2 249,837 - +0.2 249,891 + H281DRAFT_03735 0.12 +0.1 249,960 + H281DRAFT_03735 0.16 +0.1 250,043 + H281DRAFT_03735 0.20 -0.3 250,133 + H281DRAFT_03735 0.25 -0.1
Or see this region's nucleotide sequence