Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03345

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03344 and H281DRAFT_03345 are separated by 485 nucleotidesH281DRAFT_03345 and H281DRAFT_03346 are separated by 139 nucleotides H281DRAFT_03344: H281DRAFT_03344 - Predicted ester cyclase, at 403,229 to 403,807 _03344 H281DRAFT_03345: H281DRAFT_03345 - NHL repeat-containing protein, at 404,293 to 405,504 _03345 H281DRAFT_03346: H281DRAFT_03346 - Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family, at 405,644 to 406,516 _03346 Position (kb) 404 405 406Strain fitness (log2 ratio) -1 0 1at 403.317 kb on + strand, within H281DRAFT_03344at 403.400 kb on + strand, within H281DRAFT_03344at 403.600 kb on + strand, within H281DRAFT_03344at 403.606 kb on - strand, within H281DRAFT_03344at 403.913 kb on + strandat 403.914 kb on - strandat 404.120 kb on + strandat 404.663 kb on + strand, within H281DRAFT_03345at 404.664 kb on - strand, within H281DRAFT_03345at 404.666 kb on - strand, within H281DRAFT_03345at 405.940 kb on + strand, within H281DRAFT_03346

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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403,317 + H281DRAFT_03344 0.15 +0.7
403,400 + H281DRAFT_03344 0.30 -0.8
403,600 + H281DRAFT_03344 0.64 +0.3
403,606 - H281DRAFT_03344 0.65 +0.6
403,913 + -0.2
403,914 - +0.5
404,120 + +0.3
404,663 + H281DRAFT_03345 0.31 -0.1
404,664 - H281DRAFT_03345 0.31 -0.4
404,666 - H281DRAFT_03345 0.31 -0.0
405,940 + H281DRAFT_03346 0.34 -0.6

Or see this region's nucleotide sequence