Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02846

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02845 and H281DRAFT_02846 are separated by 42 nucleotidesH281DRAFT_02846 and H281DRAFT_02847 are separated by 3 nucleotidesH281DRAFT_02847 and H281DRAFT_02848 are separated by 0 nucleotides H281DRAFT_02845: H281DRAFT_02845 - glutathione S-transferase, at 439,637 to 440,272 _02845 H281DRAFT_02846: H281DRAFT_02846 - Uncharacterized conserved protein YndB, AHSA1/START domain, at 440,315 to 440,761 _02846 H281DRAFT_02847: H281DRAFT_02847 - transcriptional regulator, ArsR family, at 440,765 to 441,097 _02847 H281DRAFT_02848: H281DRAFT_02848 - Fe-S-cluster containining protein, at 441,098 to 442,000 _02848 Position (kb) 440 441Strain fitness (log2 ratio) -1 0 1at 439.487 kb on + strandat 439.488 kb on - strandat 440.149 kb on - strand, within H281DRAFT_02845at 440.527 kb on + strand, within H281DRAFT_02846at 440.745 kb on - strandat 441.047 kb on + strand, within H281DRAFT_02847at 441.148 kb on - strandat 441.404 kb on - strand, within H281DRAFT_02848at 441.687 kb on + strand, within H281DRAFT_02848

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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439,487 + -0.0
439,488 - +0.2
440,149 - H281DRAFT_02845 0.81 -0.6
440,527 + H281DRAFT_02846 0.47 +0.4
440,745 - -0.2
441,047 + H281DRAFT_02847 0.85 -1.2
441,148 - -0.0
441,404 - H281DRAFT_02848 0.34 +0.2
441,687 + H281DRAFT_02848 0.65 -0.5

Or see this region's nucleotide sequence