Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02577

Experiment: p-Coumaric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02575 and H281DRAFT_02576 are separated by 93 nucleotidesH281DRAFT_02576 and H281DRAFT_02577 are separated by 30 nucleotidesH281DRAFT_02577 and H281DRAFT_02578 are separated by 45 nucleotidesH281DRAFT_02578 and H281DRAFT_02579 are separated by 10 nucleotides H281DRAFT_02575: H281DRAFT_02575 - D-threo-aldose 1-dehydrogenase, at 150,226 to 151,203 _02575 H281DRAFT_02576: H281DRAFT_02576 - transcriptional regulator, IclR family, at 151,297 to 152,088 _02576 H281DRAFT_02577: H281DRAFT_02577 - Sugar phosphate isomerase/epimerase, at 152,119 to 152,934 _02577 H281DRAFT_02578: H281DRAFT_02578 - hydroxyquinol 1,2-dioxygenase, at 152,980 to 153,846 _02578 H281DRAFT_02579: H281DRAFT_02579 - maleylacetate reductase, at 153,857 to 154,942 _02579 Position (kb) 152 153Strain fitness (log2 ratio) -1 0 1at 151.395 kb on - strand, within H281DRAFT_02576at 151.488 kb on - strand, within H281DRAFT_02576at 151.488 kb on - strand, within H281DRAFT_02576at 151.939 kb on + strandat 152.120 kb on + strandat 152.157 kb on + strandat 152.526 kb on - strand, within H281DRAFT_02577at 152.526 kb on - strand, within H281DRAFT_02577at 152.656 kb on - strand, within H281DRAFT_02577at 152.953 kb on + strandat 153.156 kb on + strand, within H281DRAFT_02578

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
remove
151,395 - H281DRAFT_02576 0.12 +0.2
151,488 - H281DRAFT_02576 0.24 -0.2
151,488 - H281DRAFT_02576 0.24 +0.3
151,939 + +1.4
152,120 + +0.4
152,157 + -0.1
152,526 - H281DRAFT_02577 0.50 +0.2
152,526 - H281DRAFT_02577 0.50 +0.7
152,656 - H281DRAFT_02577 0.66 +0.6
152,953 + -0.7
153,156 + H281DRAFT_02578 0.20 +0.0

Or see this region's nucleotide sequence