Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02348

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02347 and H281DRAFT_02348 are separated by 28 nucleotidesH281DRAFT_02348 and H281DRAFT_02349 are separated by 1 nucleotidesH281DRAFT_02349 and H281DRAFT_02350 overlap by 23 nucleotides H281DRAFT_02347: H281DRAFT_02347 - general secretion pathway protein L, at 505,347 to 506,747 _02347 H281DRAFT_02348: H281DRAFT_02348 - general secretion pathway protein K, at 506,776 to 507,966 _02348 H281DRAFT_02349: H281DRAFT_02349 - general secretion pathway protein J, at 507,968 to 508,645 _02349 H281DRAFT_02350: H281DRAFT_02350 - general secretion pathway protein I, at 508,623 to 509,036 _02350 Position (kb) 506 507 508Strain fitness (log2 ratio) -2 -1 0 1at 505.982 kb on + strand, within H281DRAFT_02347at 505.983 kb on - strand, within H281DRAFT_02347at 505.983 kb on - strand, within H281DRAFT_02347at 505.983 kb on - strand, within H281DRAFT_02347at 505.983 kb on - strand, within H281DRAFT_02347at 505.983 kb on - strand, within H281DRAFT_02347at 505.983 kb on - strand, within H281DRAFT_02347at 505.983 kb on - strand, within H281DRAFT_02347at 505.983 kb on - strand, within H281DRAFT_02347at 505.983 kb on - strandat 505.984 kb on + strand, within H281DRAFT_02347at 505.984 kb on + strand, within H281DRAFT_02347at 505.984 kb on + strand, within H281DRAFT_02347at 505.984 kb on + strand, within H281DRAFT_02347at 505.984 kb on + strand, within H281DRAFT_02347at 505.984 kb on + strand, within H281DRAFT_02347at 505.985 kb on - strand, within H281DRAFT_02347at 506.378 kb on - strand, within H281DRAFT_02347at 506.378 kb on - strand, within H281DRAFT_02347at 506.378 kb on - strand, within H281DRAFT_02347at 506.378 kb on - strand, within H281DRAFT_02347at 506.378 kb on - strand, within H281DRAFT_02347at 506.378 kb on - strand, within H281DRAFT_02347at 506.378 kb on - strand, within H281DRAFT_02347at 506.456 kb on + strand, within H281DRAFT_02347at 506.457 kb on - strand, within H281DRAFT_02347at 506.457 kb on - strand, within H281DRAFT_02347at 506.457 kb on - strand, within H281DRAFT_02347at 506.498 kb on + strand, within H281DRAFT_02347at 506.498 kb on + strand, within H281DRAFT_02347at 506.727 kb on + strandat 506.779 kb on + strandat 506.779 kb on + strandat 506.779 kb on + strandat 506.779 kb on + strandat 506.780 kb on - strandat 506.780 kb on - strandat 506.780 kb on - strandat 506.780 kb on - strandat 506.780 kb on - strandat 506.802 kb on + strandat 506.803 kb on - strandat 506.809 kb on - strandat 506.809 kb on - strandat 506.894 kb on + strandat 506.895 kb on - strand, within H281DRAFT_02348at 506.895 kb on - strand, within H281DRAFT_02348at 506.895 kb on - strand, within H281DRAFT_02348at 506.895 kb on - strand, within H281DRAFT_02348at 506.901 kb on + strand, within H281DRAFT_02348at 506.901 kb on + strand, within H281DRAFT_02348at 506.912 kb on + strand, within H281DRAFT_02348at 506.913 kb on - strand, within H281DRAFT_02348at 507.247 kb on - strand, within H281DRAFT_02348at 507.416 kb on + strand, within H281DRAFT_02348at 507.416 kb on + strand, within H281DRAFT_02348at 507.416 kb on + strand, within H281DRAFT_02348at 507.417 kb on - strand, within H281DRAFT_02348at 507.524 kb on + strand, within H281DRAFT_02348at 507.524 kb on + strand, within H281DRAFT_02348at 507.524 kb on + strand, within H281DRAFT_02348at 507.525 kb on - strand, within H281DRAFT_02348at 507.623 kb on + strand, within H281DRAFT_02348at 507.623 kb on + strand, within H281DRAFT_02348at 507.623 kb on + strand, within H281DRAFT_02348at 507.624 kb on - strand, within H281DRAFT_02348at 507.624 kb on - strand, within H281DRAFT_02348at 507.624 kb on - strand, within H281DRAFT_02348at 507.627 kb on + strand, within H281DRAFT_02348at 507.628 kb on - strand, within H281DRAFT_02348at 507.628 kb on - strand, within H281DRAFT_02348at 507.642 kb on + strand, within H281DRAFT_02348at 507.760 kb on + strand, within H281DRAFT_02348at 507.760 kb on + strand, within H281DRAFT_02348at 507.761 kb on - strand, within H281DRAFT_02348at 507.761 kb on - strand, within H281DRAFT_02348at 507.797 kb on - strand, within H281DRAFT_02348at 507.946 kb on - strandat 508.158 kb on + strand, within H281DRAFT_02349at 508.158 kb on + strand, within H281DRAFT_02349at 508.244 kb on + strand, within H281DRAFT_02349at 508.349 kb on + strand, within H281DRAFT_02349at 508.349 kb on + strand, within H281DRAFT_02349at 508.349 kb on + strand, within H281DRAFT_02349at 508.350 kb on - strand, within H281DRAFT_02349at 508.823 kb on + strandat 508.823 kb on + strand, within H281DRAFT_02350at 508.823 kb on + strand, within H281DRAFT_02350at 508.823 kb on + strandat 508.824 kb on - strand, within H281DRAFT_02350at 508.824 kb on - strand, within H281DRAFT_02350at 508.824 kb on - strand, within H281DRAFT_02350at 508.911 kb on + strand, within H281DRAFT_02350

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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505,982 + H281DRAFT_02347 0.45 -1.0
505,983 - H281DRAFT_02347 0.45 +0.4
505,983 - H281DRAFT_02347 0.45 -0.5
505,983 - H281DRAFT_02347 0.45 -0.4
505,983 - H281DRAFT_02347 0.45 -0.9
505,983 - H281DRAFT_02347 0.45 -0.9
505,983 - H281DRAFT_02347 0.45 -1.2
505,983 - H281DRAFT_02347 0.45 +0.9
505,983 - H281DRAFT_02347 0.45 -0.0
505,983 - -0.3
505,984 + H281DRAFT_02347 0.45 -0.5
505,984 + H281DRAFT_02347 0.45 -0.6
505,984 + H281DRAFT_02347 0.45 -0.6
505,984 + H281DRAFT_02347 0.45 -0.6
505,984 + H281DRAFT_02347 0.45 -0.6
505,984 + H281DRAFT_02347 0.45 -0.8
505,985 - H281DRAFT_02347 0.46 -0.3
506,378 - H281DRAFT_02347 0.74 -0.6
506,378 - H281DRAFT_02347 0.74 -2.7
506,378 - H281DRAFT_02347 0.74 -0.4
506,378 - H281DRAFT_02347 0.74 +0.7
506,378 - H281DRAFT_02347 0.74 -0.4
506,378 - H281DRAFT_02347 0.74 -1.1
506,378 - H281DRAFT_02347 0.74 +0.0
506,456 + H281DRAFT_02347 0.79 -0.9
506,457 - H281DRAFT_02347 0.79 -0.8
506,457 - H281DRAFT_02347 0.79 -0.3
506,457 - H281DRAFT_02347 0.79 -0.7
506,498 + H281DRAFT_02347 0.82 -0.4
506,498 + H281DRAFT_02347 0.82 -1.2
506,727 + -0.7
506,779 + -0.4
506,779 + +1.6
506,779 + -0.4
506,779 + -0.5
506,780 - -0.1
506,780 - -0.1
506,780 - -0.3
506,780 - -0.7
506,780 - -0.1
506,802 + -0.8
506,803 - -1.3
506,809 - -0.4
506,809 - -0.9
506,894 + -0.3
506,895 - H281DRAFT_02348 0.10 +1.6
506,895 - H281DRAFT_02348 0.10 -0.7
506,895 - H281DRAFT_02348 0.10 -0.9
506,895 - H281DRAFT_02348 0.10 -1.0
506,901 + H281DRAFT_02348 0.10 -0.5
506,901 + H281DRAFT_02348 0.10 -0.2
506,912 + H281DRAFT_02348 0.11 -0.7
506,913 - H281DRAFT_02348 0.12 +0.5
507,247 - H281DRAFT_02348 0.40 -0.6
507,416 + H281DRAFT_02348 0.54 -1.0
507,416 + H281DRAFT_02348 0.54 +0.3
507,416 + H281DRAFT_02348 0.54 +0.5
507,417 - H281DRAFT_02348 0.54 -0.2
507,524 + H281DRAFT_02348 0.63 -0.1
507,524 + H281DRAFT_02348 0.63 -0.4
507,524 + H281DRAFT_02348 0.63 -2.3
507,525 - H281DRAFT_02348 0.63 +0.4
507,623 + H281DRAFT_02348 0.71 -0.6
507,623 + H281DRAFT_02348 0.71 -1.9
507,623 + H281DRAFT_02348 0.71 -0.5
507,624 - H281DRAFT_02348 0.71 -0.3
507,624 - H281DRAFT_02348 0.71 +0.2
507,624 - H281DRAFT_02348 0.71 +0.1
507,627 + H281DRAFT_02348 0.71 -0.2
507,628 - H281DRAFT_02348 0.72 -0.5
507,628 - H281DRAFT_02348 0.72 +0.0
507,642 + H281DRAFT_02348 0.73 -0.1
507,760 + H281DRAFT_02348 0.83 +0.7
507,760 + H281DRAFT_02348 0.83 -0.2
507,761 - H281DRAFT_02348 0.83 -0.4
507,761 - H281DRAFT_02348 0.83 +0.2
507,797 - H281DRAFT_02348 0.86 -0.6
507,946 - +0.2
508,158 + H281DRAFT_02349 0.28 +0.1
508,158 + H281DRAFT_02349 0.28 +0.1
508,244 + H281DRAFT_02349 0.41 -1.1
508,349 + H281DRAFT_02349 0.56 -0.3
508,349 + H281DRAFT_02349 0.56 -0.0
508,349 + H281DRAFT_02349 0.56 -0.5
508,350 - H281DRAFT_02349 0.56 -0.6
508,823 + -0.3
508,823 + H281DRAFT_02350 0.48 +0.3
508,823 + H281DRAFT_02350 0.48 +0.2
508,823 + +0.2
508,824 - H281DRAFT_02350 0.49 -0.7
508,824 - H281DRAFT_02350 0.49 -0.6
508,824 - H281DRAFT_02350 0.49 -0.2
508,911 + H281DRAFT_02350 0.70 -0.7

Or see this region's nucleotide sequence