Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02340

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02339 and H281DRAFT_02340 are separated by 226 nucleotidesH281DRAFT_02340 and H281DRAFT_02341 are separated by 17 nucleotides H281DRAFT_02339: H281DRAFT_02339 - glutamate-cysteine ligase, at 496,779 to 498,425 _02339 H281DRAFT_02340: H281DRAFT_02340 - hypothetical protein, at 498,652 to 499,167 _02340 H281DRAFT_02341: H281DRAFT_02341 - MFS transporter, DHA2 family, multidrug resistance protein, at 499,185 to 500,771 _02341 Position (kb) 498 499 500Strain fitness (log2 ratio) -2 -1 0 1at 497.661 kb on + strand, within H281DRAFT_02339at 497.661 kb on + strand, within H281DRAFT_02339at 497.676 kb on - strand, within H281DRAFT_02339at 497.739 kb on + strand, within H281DRAFT_02339at 497.739 kb on + strand, within H281DRAFT_02339at 497.769 kb on + strand, within H281DRAFT_02339at 497.769 kb on + strand, within H281DRAFT_02339at 497.817 kb on + strand, within H281DRAFT_02339at 497.817 kb on + strand, within H281DRAFT_02339at 497.817 kb on + strand, within H281DRAFT_02339at 497.898 kb on + strand, within H281DRAFT_02339at 497.898 kb on + strand, within H281DRAFT_02339at 497.899 kb on - strand, within H281DRAFT_02339at 497.981 kb on - strand, within H281DRAFT_02339at 498.061 kb on + strand, within H281DRAFT_02339at 498.061 kb on + strand, within H281DRAFT_02339at 498.062 kb on - strand, within H281DRAFT_02339at 498.261 kb on + strandat 498.262 kb on - strandat 498.262 kb on - strandat 498.362 kb on - strandat 498.362 kb on - strandat 498.399 kb on + strandat 498.400 kb on - strandat 498.400 kb on - strandat 498.513 kb on + strandat 498.514 kb on - strandat 498.517 kb on + strandat 498.517 kb on + strandat 498.517 kb on + strandat 498.518 kb on - strandat 498.518 kb on - strandat 498.518 kb on - strandat 498.518 kb on - strandat 498.581 kb on + strandat 498.582 kb on - strandat 498.582 kb on - strandat 498.619 kb on + strandat 498.745 kb on - strand, within H281DRAFT_02340at 498.753 kb on - strand, within H281DRAFT_02340at 498.753 kb on - strand, within H281DRAFT_02340at 498.753 kb on - strand, within H281DRAFT_02340at 498.843 kb on + strand, within H281DRAFT_02340at 499.033 kb on + strand, within H281DRAFT_02340at 499.033 kb on + strand, within H281DRAFT_02340at 499.034 kb on - strand, within H281DRAFT_02340at 499.034 kb on - strand, within H281DRAFT_02340at 499.034 kb on - strand, within H281DRAFT_02340at 499.270 kb on - strandat 499.298 kb on + strandat 499.298 kb on + strandat 499.299 kb on - strandat 499.299 kb on - strandat 499.299 kb on - strandat 499.299 kb on - strandat 499.299 kb on - strandat 499.300 kb on + strandat 499.300 kb on + strandat 499.300 kb on + strandat 499.300 kb on + strandat 499.301 kb on - strandat 499.301 kb on - strandat 499.301 kb on - strandat 499.301 kb on - strandat 499.301 kb on - strandat 499.301 kb on - strandat 499.301 kb on - strandat 499.301 kb on - strandat 499.301 kb on - strandat 499.381 kb on + strand, within H281DRAFT_02341at 499.381 kb on + strand, within H281DRAFT_02341at 499.392 kb on - strand, within H281DRAFT_02341at 499.403 kb on - strand, within H281DRAFT_02341at 499.446 kb on - strand, within H281DRAFT_02341at 499.459 kb on + strand, within H281DRAFT_02341at 499.459 kb on + strand, within H281DRAFT_02341at 499.460 kb on - strand, within H281DRAFT_02341at 499.467 kb on - strand, within H281DRAFT_02341at 499.467 kb on - strand, within H281DRAFT_02341at 499.467 kb on - strand, within H281DRAFT_02341at 499.613 kb on + strand, within H281DRAFT_02341at 499.635 kb on - strand, within H281DRAFT_02341at 499.813 kb on + strand, within H281DRAFT_02341at 499.814 kb on - strand, within H281DRAFT_02341at 500.015 kb on + strand, within H281DRAFT_02341at 500.016 kb on - strand, within H281DRAFT_02341at 500.096 kb on + strand, within H281DRAFT_02341at 500.096 kb on + strand, within H281DRAFT_02341at 500.096 kb on + strand, within H281DRAFT_02341at 500.096 kb on + strand, within H281DRAFT_02341at 500.096 kb on + strand, within H281DRAFT_02341at 500.096 kb on + strand, within H281DRAFT_02341at 500.097 kb on - strand, within H281DRAFT_02341at 500.097 kb on - strand, within H281DRAFT_02341at 500.115 kb on - strand, within H281DRAFT_02341

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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497,661 + H281DRAFT_02339 0.54 -2.0
497,661 + H281DRAFT_02339 0.54 -1.8
497,676 - H281DRAFT_02339 0.54 -1.3
497,739 + H281DRAFT_02339 0.58 -1.7
497,739 + H281DRAFT_02339 0.58 -0.7
497,769 + H281DRAFT_02339 0.60 -2.6
497,769 + H281DRAFT_02339 0.60 -0.7
497,817 + H281DRAFT_02339 0.63 -1.3
497,817 + H281DRAFT_02339 0.63 -1.4
497,817 + H281DRAFT_02339 0.63 -2.4
497,898 + H281DRAFT_02339 0.68 -0.9
497,898 + H281DRAFT_02339 0.68 -1.4
497,899 - H281DRAFT_02339 0.68 -0.7
497,981 - H281DRAFT_02339 0.73 -0.8
498,061 + H281DRAFT_02339 0.78 -0.3
498,061 + H281DRAFT_02339 0.78 -1.0
498,062 - H281DRAFT_02339 0.78 -0.9
498,261 + +0.3
498,262 - -0.6
498,262 - -1.4
498,362 - -0.9
498,362 - +0.5
498,399 + +0.2
498,400 - -0.6
498,400 - -0.2
498,513 + +0.1
498,514 - +0.3
498,517 + +0.0
498,517 + +0.2
498,517 + -0.1
498,518 - -0.1
498,518 - +0.4
498,518 - -0.6
498,518 - -1.1
498,581 + -0.5
498,582 - +0.4
498,582 - +0.4
498,619 + +0.3
498,745 - H281DRAFT_02340 0.18 -0.3
498,753 - H281DRAFT_02340 0.20 -0.5
498,753 - H281DRAFT_02340 0.20 +0.5
498,753 - H281DRAFT_02340 0.20 -0.3
498,843 + H281DRAFT_02340 0.37 -0.2
499,033 + H281DRAFT_02340 0.74 -0.2
499,033 + H281DRAFT_02340 0.74 +0.3
499,034 - H281DRAFT_02340 0.74 +0.6
499,034 - H281DRAFT_02340 0.74 +0.3
499,034 - H281DRAFT_02340 0.74 +0.0
499,270 - -0.4
499,298 + -1.6
499,298 + -0.1
499,299 - +0.0
499,299 - +0.3
499,299 - +0.3
499,299 - -0.4
499,299 - +0.2
499,300 + -0.3
499,300 + +0.2
499,300 + +1.0
499,300 + -0.5
499,301 - +0.3
499,301 - +0.0
499,301 - -0.3
499,301 - -0.2
499,301 - -0.6
499,301 - +0.0
499,301 - +0.2
499,301 - +0.0
499,301 - +0.3
499,381 + H281DRAFT_02341 0.12 +0.2
499,381 + H281DRAFT_02341 0.12 -0.1
499,392 - H281DRAFT_02341 0.13 -0.2
499,403 - H281DRAFT_02341 0.14 +0.2
499,446 - H281DRAFT_02341 0.16 -0.5
499,459 + H281DRAFT_02341 0.17 +0.1
499,459 + H281DRAFT_02341 0.17 +0.5
499,460 - H281DRAFT_02341 0.17 -0.3
499,467 - H281DRAFT_02341 0.18 -0.5
499,467 - H281DRAFT_02341 0.18 +0.1
499,467 - H281DRAFT_02341 0.18 +0.2
499,613 + H281DRAFT_02341 0.27 -0.6
499,635 - H281DRAFT_02341 0.28 -0.3
499,813 + H281DRAFT_02341 0.40 +0.9
499,814 - H281DRAFT_02341 0.40 +0.0
500,015 + H281DRAFT_02341 0.52 +0.7
500,016 - H281DRAFT_02341 0.52 -0.1
500,096 + H281DRAFT_02341 0.57 -0.2
500,096 + H281DRAFT_02341 0.57 -0.1
500,096 + H281DRAFT_02341 0.57 -0.5
500,096 + H281DRAFT_02341 0.57 -0.4
500,096 + H281DRAFT_02341 0.57 -0.0
500,096 + H281DRAFT_02341 0.57 +1.2
500,097 - H281DRAFT_02341 0.57 +0.6
500,097 - H281DRAFT_02341 0.57 -0.2
500,115 - H281DRAFT_02341 0.59 +0.2

Or see this region's nucleotide sequence