Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02215

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02214 and H281DRAFT_02215 overlap by 4 nucleotidesH281DRAFT_02215 and H281DRAFT_02216 are separated by 14 nucleotides H281DRAFT_02214: H281DRAFT_02214 - homoserine O-acetyltransferase, at 356,911 to 358,056 _02214 H281DRAFT_02215: H281DRAFT_02215 - methionine biosynthesis protein MetW, at 358,053 to 358,661 _02215 H281DRAFT_02216: H281DRAFT_02216 - MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG, at 358,676 to 360,070 _02216 Position (kb) 358 359Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 357.097 kb on + strand, within H281DRAFT_02214at 357.168 kb on + strand, within H281DRAFT_02214at 357.334 kb on - strand, within H281DRAFT_02214at 357.400 kb on + strand, within H281DRAFT_02214at 357.400 kb on + strand, within H281DRAFT_02214at 357.526 kb on + strand, within H281DRAFT_02214at 357.526 kb on + strand, within H281DRAFT_02214at 357.526 kb on + strand, within H281DRAFT_02214at 357.526 kb on + strand, within H281DRAFT_02214at 357.527 kb on - strand, within H281DRAFT_02214at 357.527 kb on - strand, within H281DRAFT_02214at 357.538 kb on - strand, within H281DRAFT_02214at 357.592 kb on + strand, within H281DRAFT_02214at 357.592 kb on + strand, within H281DRAFT_02214at 357.592 kb on + strand, within H281DRAFT_02214at 357.593 kb on - strandat 357.593 kb on - strand, within H281DRAFT_02214at 357.664 kb on + strand, within H281DRAFT_02214at 357.664 kb on + strand, within H281DRAFT_02214at 357.665 kb on - strand, within H281DRAFT_02214at 357.665 kb on - strand, within H281DRAFT_02214at 357.665 kb on - strand, within H281DRAFT_02214at 357.665 kb on - strand, within H281DRAFT_02214at 357.704 kb on - strand, within H281DRAFT_02214at 357.704 kb on - strandat 357.704 kb on - strand, within H281DRAFT_02214at 357.737 kb on - strand, within H281DRAFT_02214at 357.754 kb on + strand, within H281DRAFT_02214at 357.754 kb on + strand, within H281DRAFT_02214at 357.754 kb on + strand, within H281DRAFT_02214at 357.754 kb on + strand, within H281DRAFT_02214at 357.754 kb on + strand, within H281DRAFT_02214at 357.754 kb on + strand, within H281DRAFT_02214at 357.755 kb on - strand, within H281DRAFT_02214at 357.755 kb on - strand, within H281DRAFT_02214at 357.755 kb on - strand, within H281DRAFT_02214at 357.758 kb on + strand, within H281DRAFT_02214at 357.758 kb on + strand, within H281DRAFT_02214at 357.758 kb on + strand, within H281DRAFT_02214at 357.759 kb on - strand, within H281DRAFT_02214at 357.759 kb on - strand, within H281DRAFT_02214at 357.759 kb on - strand, within H281DRAFT_02214at 357.759 kb on - strand, within H281DRAFT_02214at 357.759 kb on - strand, within H281DRAFT_02214at 357.759 kb on - strand, within H281DRAFT_02214at 357.781 kb on + strand, within H281DRAFT_02214at 357.781 kb on + strand, within H281DRAFT_02214at 357.782 kb on - strand, within H281DRAFT_02214at 357.834 kb on + strand, within H281DRAFT_02214at 357.835 kb on - strand, within H281DRAFT_02214at 357.835 kb on - strand, within H281DRAFT_02214at 357.848 kb on - strand, within H281DRAFT_02214at 357.944 kb on - strandat 358.022 kb on - strandat 358.025 kb on - strandat 358.074 kb on + strandat 358.074 kb on + strandat 358.400 kb on + strand, within H281DRAFT_02215at 358.400 kb on + strand, within H281DRAFT_02215at 358.400 kb on + strand, within H281DRAFT_02215at 358.400 kb on + strand, within H281DRAFT_02215at 358.400 kb on + strand, within H281DRAFT_02215at 358.401 kb on - strand, within H281DRAFT_02215at 358.486 kb on - strand, within H281DRAFT_02215at 358.628 kb on + strandat 358.628 kb on + strandat 358.629 kb on - strandat 358.629 kb on - strandat 358.641 kb on + strandat 358.642 kb on - strandat 358.659 kb on + strandat 358.660 kb on - strandat 358.708 kb on + strandat 358.708 kb on + strandat 358.709 kb on - strandat 358.750 kb on + strandat 358.751 kb on - strandat 358.783 kb on + strandat 358.783 kb on + strandat 358.815 kb on - strandat 358.815 kb on - strandat 358.815 kb on - strandat 358.815 kb on - strandat 358.893 kb on - strand, within H281DRAFT_02216at 358.893 kb on - strand, within H281DRAFT_02216at 358.932 kb on - strand, within H281DRAFT_02216at 359.183 kb on + strand, within H281DRAFT_02216at 359.183 kb on + strand, within H281DRAFT_02216at 359.183 kb on + strandat 359.184 kb on - strand, within H281DRAFT_02216at 359.199 kb on + strand, within H281DRAFT_02216at 359.199 kb on + strand, within H281DRAFT_02216at 359.200 kb on - strand, within H281DRAFT_02216at 359.200 kb on - strand, within H281DRAFT_02216at 359.200 kb on - strand, within H281DRAFT_02216at 359.202 kb on + strand, within H281DRAFT_02216

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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357,097 + H281DRAFT_02214 0.16 -2.6
357,168 + H281DRAFT_02214 0.22 -2.4
357,334 - H281DRAFT_02214 0.37 -5.5
357,400 + H281DRAFT_02214 0.43 -4.3
357,400 + H281DRAFT_02214 0.43 -4.3
357,526 + H281DRAFT_02214 0.54 -1.0
357,526 + H281DRAFT_02214 0.54 +0.2
357,526 + H281DRAFT_02214 0.54 -4.7
357,526 + H281DRAFT_02214 0.54 -4.5
357,527 - H281DRAFT_02214 0.54 -5.0
357,527 - H281DRAFT_02214 0.54 -4.5
357,538 - H281DRAFT_02214 0.55 -3.0
357,592 + H281DRAFT_02214 0.59 -4.8
357,592 + H281DRAFT_02214 0.59 -6.1
357,592 + H281DRAFT_02214 0.59 -4.3
357,593 - -0.9
357,593 - H281DRAFT_02214 0.60 -3.9
357,664 + H281DRAFT_02214 0.66 -2.8
357,664 + H281DRAFT_02214 0.66 -3.6
357,665 - H281DRAFT_02214 0.66 -2.2
357,665 - H281DRAFT_02214 0.66 -3.6
357,665 - H281DRAFT_02214 0.66 -3.9
357,665 - H281DRAFT_02214 0.66 -2.6
357,704 - H281DRAFT_02214 0.69 -3.3
357,704 - -0.4
357,704 - H281DRAFT_02214 0.69 -1.6
357,737 - H281DRAFT_02214 0.72 -4.5
357,754 + H281DRAFT_02214 0.74 -3.4
357,754 + H281DRAFT_02214 0.74 -2.9
357,754 + H281DRAFT_02214 0.74 -3.1
357,754 + H281DRAFT_02214 0.74 -3.2
357,754 + H281DRAFT_02214 0.74 -4.2
357,754 + H281DRAFT_02214 0.74 -4.3
357,755 - H281DRAFT_02214 0.74 -2.2
357,755 - H281DRAFT_02214 0.74 -2.1
357,755 - H281DRAFT_02214 0.74 -4.5
357,758 + H281DRAFT_02214 0.74 -4.6
357,758 + H281DRAFT_02214 0.74 -4.7
357,758 + H281DRAFT_02214 0.74 -1.8
357,759 - H281DRAFT_02214 0.74 -3.6
357,759 - H281DRAFT_02214 0.74 -2.5
357,759 - H281DRAFT_02214 0.74 -4.4
357,759 - H281DRAFT_02214 0.74 -5.0
357,759 - H281DRAFT_02214 0.74 -4.9
357,759 - H281DRAFT_02214 0.74 -2.4
357,781 + H281DRAFT_02214 0.76 -3.0
357,781 + H281DRAFT_02214 0.76 -4.5
357,782 - H281DRAFT_02214 0.76 -2.1
357,834 + H281DRAFT_02214 0.81 -3.8
357,835 - H281DRAFT_02214 0.81 -3.1
357,835 - H281DRAFT_02214 0.81 -3.6
357,848 - H281DRAFT_02214 0.82 -2.5
357,944 - -5.5
358,022 - -6.2
358,025 - -0.2
358,074 + -3.8
358,074 + -1.9
358,400 + H281DRAFT_02215 0.57 -1.9
358,400 + H281DRAFT_02215 0.57 -4.5
358,400 + H281DRAFT_02215 0.57 -1.3
358,400 + H281DRAFT_02215 0.57 -5.4
358,400 + H281DRAFT_02215 0.57 -3.1
358,401 - H281DRAFT_02215 0.57 -1.3
358,486 - H281DRAFT_02215 0.71 -3.0
358,628 + -3.6
358,628 + -1.4
358,629 - -2.2
358,629 - -0.4
358,641 + -2.7
358,642 - -3.6
358,659 + +0.7
358,660 - -0.1
358,708 + +1.1
358,708 + +0.1
358,709 - -0.1
358,750 + +0.7
358,751 - +1.0
358,783 + +0.8
358,783 + +0.7
358,815 - +0.6
358,815 - +0.5
358,815 - +0.3
358,815 - +0.4
358,893 - H281DRAFT_02216 0.16 +0.4
358,893 - H281DRAFT_02216 0.16 +0.7
358,932 - H281DRAFT_02216 0.18 +0.4
359,183 + H281DRAFT_02216 0.36 +0.9
359,183 + H281DRAFT_02216 0.36 -0.7
359,183 + +2.1
359,184 - H281DRAFT_02216 0.36 +0.2
359,199 + H281DRAFT_02216 0.37 -1.0
359,199 + H281DRAFT_02216 0.37 +0.4
359,200 - H281DRAFT_02216 0.38 +0.9
359,200 - H281DRAFT_02216 0.38 +1.1
359,200 - H281DRAFT_02216 0.38 +0.4
359,202 + H281DRAFT_02216 0.38 +0.2

Or see this region's nucleotide sequence