Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02149

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02146 and H281DRAFT_02147 are separated by 191 nucleotidesH281DRAFT_02147 and H281DRAFT_02148 are separated by 63 nucleotidesH281DRAFT_02148 and H281DRAFT_02149 overlap by 4 nucleotidesH281DRAFT_02149 and H281DRAFT_02150 are separated by 25 nucleotidesH281DRAFT_02150 and H281DRAFT_02151 are separated by 238 nucleotides H281DRAFT_02146: H281DRAFT_02146 - Integrase, at 287,791 to 289,005 _02146 H281DRAFT_02147: H281DRAFT_02147 - tRNA_Ala_CGC, at 289,197 to 289,272 _02147 H281DRAFT_02148: H281DRAFT_02148 - cytochrome c, at 289,336 to 289,686 _02148 H281DRAFT_02149: H281DRAFT_02149 - Osmotically-inducible protein OsmY, contains BON domain, at 289,683 to 290,474 _02149 H281DRAFT_02150: H281DRAFT_02150 - phosphoheptose isomerase, at 290,500 to 291,087 _02150 H281DRAFT_02151: H281DRAFT_02151 - putative endonuclease, at 291,326 to 291,808 _02151 Position (kb) 289 290 291Strain fitness (log2 ratio) -1 0 1 2 3at 288.711 kb on + strand, within H281DRAFT_02146at 288.839 kb on + strand, within H281DRAFT_02146at 288.840 kb on - strand, within H281DRAFT_02146at 288.882 kb on - strand, within H281DRAFT_02146at 288.897 kb on - strandat 288.897 kb on - strandat 288.954 kb on - strandat 288.996 kb on + strandat 288.996 kb on + strandat 289.147 kb on - strandat 289.174 kb on - strandat 289.174 kb on - strandat 289.264 kb on + strand, within H281DRAFT_02147at 289.265 kb on - strandat 289.289 kb on + strandat 289.290 kb on - strandat 289.290 kb on - strandat 289.290 kb on - strandat 289.496 kb on + strand, within H281DRAFT_02148at 289.610 kb on + strand, within H281DRAFT_02148at 289.610 kb on + strand, within H281DRAFT_02148at 289.885 kb on + strand, within H281DRAFT_02149at 289.885 kb on + strand, within H281DRAFT_02149at 289.886 kb on - strand, within H281DRAFT_02149at 289.981 kb on + strand, within H281DRAFT_02149at 289.982 kb on - strand, within H281DRAFT_02149at 289.982 kb on - strand, within H281DRAFT_02149at 290.028 kb on - strand, within H281DRAFT_02149at 290.028 kb on - strand, within H281DRAFT_02149at 290.071 kb on + strand, within H281DRAFT_02149at 290.071 kb on + strand, within H281DRAFT_02149at 290.072 kb on - strand, within H281DRAFT_02149at 290.072 kb on - strand, within H281DRAFT_02149at 290.136 kb on - strand, within H281DRAFT_02149at 290.136 kb on - strand, within H281DRAFT_02149at 290.163 kb on - strand, within H281DRAFT_02149at 290.479 kb on + strandat 290.479 kb on + strandat 290.479 kb on + strandat 290.479 kb on + strandat 290.479 kb on + strandat 290.480 kb on - strandat 290.480 kb on - strandat 290.480 kb on - strandat 290.539 kb on + strandat 290.540 kb on - strandat 290.540 kb on - strandat 290.626 kb on + strand, within H281DRAFT_02150at 290.626 kb on + strand, within H281DRAFT_02150at 290.626 kb on + strand, within H281DRAFT_02150at 290.790 kb on - strand, within H281DRAFT_02150at 290.790 kb on - strand, within H281DRAFT_02150at 290.807 kb on + strand, within H281DRAFT_02150at 290.838 kb on + strand, within H281DRAFT_02150at 290.847 kb on + strand, within H281DRAFT_02150at 290.847 kb on + strand, within H281DRAFT_02150at 290.847 kb on + strand, within H281DRAFT_02150at 290.847 kb on + strand, within H281DRAFT_02150at 290.847 kb on + strand, within H281DRAFT_02150at 290.848 kb on - strand, within H281DRAFT_02150at 290.955 kb on + strand, within H281DRAFT_02150at 290.955 kb on + strand, within H281DRAFT_02150at 291.052 kb on - strandat 291.096 kb on + strandat 291.097 kb on - strandat 291.097 kb on - strandat 291.104 kb on - strandat 291.112 kb on + strandat 291.145 kb on + strandat 291.146 kb on - strandat 291.146 kb on - strandat 291.146 kb on - strandat 291.146 kb on - strandat 291.146 kb on - strandat 291.172 kb on - strandat 291.172 kb on - strandat 291.300 kb on + strandat 291.444 kb on + strand, within H281DRAFT_02151at 291.445 kb on - strand, within H281DRAFT_02151at 291.445 kb on - strand, within H281DRAFT_02151at 291.445 kb on - strand, within H281DRAFT_02151at 291.462 kb on - strand, within H281DRAFT_02151at 291.462 kb on - strand, within H281DRAFT_02151

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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288,711 + H281DRAFT_02146 0.76 -0.0
288,839 + H281DRAFT_02146 0.86 -0.9
288,840 - H281DRAFT_02146 0.86 +0.4
288,882 - H281DRAFT_02146 0.90 -0.5
288,897 - -0.7
288,897 - -0.3
288,954 - +1.7
288,996 + +0.2
288,996 + -1.6
289,147 - -0.8
289,174 - -0.6
289,174 - +1.1
289,264 + H281DRAFT_02147 0.88 -0.1
289,265 - -0.4
289,289 + +0.2
289,290 - +1.5
289,290 - +0.4
289,290 - -0.0
289,496 + H281DRAFT_02148 0.46 -0.4
289,610 + H281DRAFT_02148 0.78 +0.4
289,610 + H281DRAFT_02148 0.78 +0.3
289,885 + H281DRAFT_02149 0.26 +0.3
289,885 + H281DRAFT_02149 0.26 +0.5
289,886 - H281DRAFT_02149 0.26 +0.0
289,981 + H281DRAFT_02149 0.38 +1.0
289,982 - H281DRAFT_02149 0.38 +2.8
289,982 - H281DRAFT_02149 0.38 +0.1
290,028 - H281DRAFT_02149 0.44 +0.0
290,028 - H281DRAFT_02149 0.44 +0.3
290,071 + H281DRAFT_02149 0.49 +0.1
290,071 + H281DRAFT_02149 0.49 +0.4
290,072 - H281DRAFT_02149 0.49 +0.6
290,072 - H281DRAFT_02149 0.49 +1.0
290,136 - H281DRAFT_02149 0.57 +0.6
290,136 - H281DRAFT_02149 0.57 +0.9
290,163 - H281DRAFT_02149 0.61 -0.1
290,479 + +0.4
290,479 + +0.1
290,479 + +0.6
290,479 + +1.5
290,479 + -0.0
290,480 - -0.4
290,480 - -0.2
290,480 - +0.2
290,539 + +0.1
290,540 - -0.8
290,540 - -0.9
290,626 + H281DRAFT_02150 0.21 +0.5
290,626 + H281DRAFT_02150 0.21 +0.8
290,626 + H281DRAFT_02150 0.21 +0.5
290,790 - H281DRAFT_02150 0.49 +0.0
290,790 - H281DRAFT_02150 0.49 +0.0
290,807 + H281DRAFT_02150 0.52 +0.2
290,838 + H281DRAFT_02150 0.57 +0.4
290,847 + H281DRAFT_02150 0.59 -0.8
290,847 + H281DRAFT_02150 0.59 +0.6
290,847 + H281DRAFT_02150 0.59 +0.3
290,847 + H281DRAFT_02150 0.59 -0.1
290,847 + H281DRAFT_02150 0.59 +0.4
290,848 - H281DRAFT_02150 0.59 -0.1
290,955 + H281DRAFT_02150 0.77 +0.1
290,955 + H281DRAFT_02150 0.77 +0.7
291,052 - -0.0
291,096 + +0.5
291,097 - -0.6
291,097 - -1.0
291,104 - -0.5
291,112 + -0.3
291,145 + +1.0
291,146 - +0.6
291,146 - +0.5
291,146 - +0.2
291,146 - -0.0
291,146 - -0.4
291,172 - -1.3
291,172 - -0.1
291,300 + -0.0
291,444 + H281DRAFT_02151 0.24 +0.5
291,445 - H281DRAFT_02151 0.25 +1.1
291,445 - H281DRAFT_02151 0.25 -0.4
291,445 - H281DRAFT_02151 0.25 +1.2
291,462 - H281DRAFT_02151 0.28 +0.1
291,462 - H281DRAFT_02151 0.28 +0.6

Or see this region's nucleotide sequence