Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01489

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01488 and H281DRAFT_01489 are separated by 138 nucleotidesH281DRAFT_01489 and H281DRAFT_01490 are separated by 50 nucleotides H281DRAFT_01488: H281DRAFT_01488 - hypothetical protein, at 357,261 to 358,073 _01488 H281DRAFT_01489: H281DRAFT_01489 - hypothetical protein, at 358,212 to 358,976 _01489 H281DRAFT_01490: H281DRAFT_01490 - Uncharacterized conserved protein, at 359,027 to 360,067 _01490 Position (kb) 358 359Strain fitness (log2 ratio) -1 0 1at 357.477 kb on - strand, within H281DRAFT_01488at 357.777 kb on - strand, within H281DRAFT_01488at 357.945 kb on - strand, within H281DRAFT_01488at 358.403 kb on + strand, within H281DRAFT_01489at 358.537 kb on - strand, within H281DRAFT_01489at 358.706 kb on - strand, within H281DRAFT_01489at 358.870 kb on + strand, within H281DRAFT_01489at 359.042 kb on + strandat 359.051 kb on - strandat 359.203 kb on + strand, within H281DRAFT_01490at 359.254 kb on + strand, within H281DRAFT_01490at 359.328 kb on - strand, within H281DRAFT_01490at 359.367 kb on - strand, within H281DRAFT_01490at 359.393 kb on + strand, within H281DRAFT_01490at 359.394 kb on - strand, within H281DRAFT_01490at 359.516 kb on + strand, within H281DRAFT_01490at 359.745 kb on + strand, within H281DRAFT_01490at 359.774 kb on + strand, within H281DRAFT_01490at 359.782 kb on - strand, within H281DRAFT_01490at 359.814 kb on - strand, within H281DRAFT_01490

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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357,477 - H281DRAFT_01488 0.27 -0.3
357,777 - H281DRAFT_01488 0.63 +0.0
357,945 - H281DRAFT_01488 0.84 -0.1
358,403 + H281DRAFT_01489 0.25 +0.1
358,537 - H281DRAFT_01489 0.42 +0.1
358,706 - H281DRAFT_01489 0.65 +1.4
358,870 + H281DRAFT_01489 0.86 +0.8
359,042 + -0.2
359,051 - -0.3
359,203 + H281DRAFT_01490 0.17 +0.2
359,254 + H281DRAFT_01490 0.22 +0.6
359,328 - H281DRAFT_01490 0.29 +0.4
359,367 - H281DRAFT_01490 0.33 +0.9
359,393 + H281DRAFT_01490 0.35 +0.2
359,394 - H281DRAFT_01490 0.35 -0.4
359,516 + H281DRAFT_01490 0.47 +0.3
359,745 + H281DRAFT_01490 0.69 +0.0
359,774 + H281DRAFT_01490 0.72 +0.4
359,782 - H281DRAFT_01490 0.73 +0.0
359,814 - H281DRAFT_01490 0.76 +0.5

Or see this region's nucleotide sequence