Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01299

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01298 and H281DRAFT_01299 are separated by 262 nucleotidesH281DRAFT_01299 and H281DRAFT_01300 are separated by 27 nucleotides H281DRAFT_01298: H281DRAFT_01298 - beta-RFAP synthase, at 136,386 to 137,414 _01298 H281DRAFT_01299: H281DRAFT_01299 - methylene-tetrahydromethanopterin dehydrogenase, at 137,677 to 138,642 _01299 H281DRAFT_01300: H281DRAFT_01300 - Predicted ATP-dependent carboligase, ATP-grasp superfamily, at 138,670 to 139,884 _01300 Position (kb) 137 138 139Strain fitness (log2 ratio) -1 0 1 2at 137.539 kb on - strandat 137.539 kb on - strandat 137.539 kb on - strandat 137.594 kb on + strandat 137.595 kb on - strandat 137.689 kb on - strandat 137.737 kb on + strandat 137.791 kb on - strand, within H281DRAFT_01299at 138.529 kb on + strand, within H281DRAFT_01299at 138.530 kb on - strand, within H281DRAFT_01299at 139.196 kb on - strand, within H281DRAFT_01300at 139.287 kb on + strand, within H281DRAFT_01300at 139.287 kb on + strand, within H281DRAFT_01300at 139.288 kb on - strand, within H281DRAFT_01300at 139.288 kb on - strand, within H281DRAFT_01300at 139.423 kb on - strand, within H281DRAFT_01300

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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137,539 - -0.7
137,539 - -0.9
137,539 - -0.1
137,594 + +0.1
137,595 - +0.2
137,689 - -0.1
137,737 + -0.6
137,791 - H281DRAFT_01299 0.12 +2.0
138,529 + H281DRAFT_01299 0.88 -0.1
138,530 - H281DRAFT_01299 0.88 +0.6
139,196 - H281DRAFT_01300 0.43 -0.4
139,287 + H281DRAFT_01300 0.51 -0.2
139,287 + H281DRAFT_01300 0.51 -0.2
139,288 - H281DRAFT_01300 0.51 +0.8
139,288 - H281DRAFT_01300 0.51 +1.3
139,423 - H281DRAFT_01300 0.62 +1.0

Or see this region's nucleotide sequence