Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00975 and H281DRAFT_00976 are separated by 112 nucleotides H281DRAFT_00976 and H281DRAFT_00977 are separated by 232 nucleotides H281DRAFT_00977 and H281DRAFT_00978 are separated by 366 nucleotides
H281DRAFT_00975: H281DRAFT_00975 - choline dehydrogenase, at 1,093,117 to 1,094,778
_00975
H281DRAFT_00976: H281DRAFT_00976 - LysR family transcriptional regulator, glycine cleavage system transcriptional activator, at 1,094,891 to 1,095,826
_00976
H281DRAFT_00977: H281DRAFT_00977 - hypothetical protein, at 1,096,059 to 1,096,424
_00977
H281DRAFT_00978: H281DRAFT_00978 - glutathione S-transferase, at 1,096,791 to 1,097,267
_00978
Position (kb)
1094
1095
1096 Strain fitness (log2 ratio)
-1
0
1 at 1094.015 kb on - strand, within H281DRAFT_00975 at 1094.090 kb on - strand, within H281DRAFT_00975 at 1094.188 kb on + strand, within H281DRAFT_00975 at 1094.188 kb on + strand, within H281DRAFT_00975 at 1094.530 kb on + strand, within H281DRAFT_00975 at 1094.749 kb on + strand at 1095.187 kb on + strand, within H281DRAFT_00976 at 1095.601 kb on + strand, within H281DRAFT_00976 at 1095.876 kb on + strand at 1095.877 kb on - strand at 1095.890 kb on + strand at 1096.342 kb on + strand, within H281DRAFT_00977 at 1096.343 kb on - strand, within H281DRAFT_00977 at 1096.487 kb on + strand at 1096.491 kb on - strand at 1096.602 kb on + strand at 1096.603 kb on - strand at 1096.636 kb on + strand at 1096.636 kb on + strand at 1096.636 kb on + strand at 1096.636 kb on + strand at 1096.636 kb on + strand at 1096.636 kb on + strand at 1096.637 kb on - strand at 1096.822 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 1,094,015 - H281DRAFT_00975 0.54 -0.5 1,094,090 - H281DRAFT_00975 0.59 -0.5 1,094,188 + H281DRAFT_00975 0.64 +0.2 1,094,188 + H281DRAFT_00975 0.64 -0.4 1,094,530 + H281DRAFT_00975 0.85 +0.2 1,094,749 + +0.5 1,095,187 + H281DRAFT_00976 0.32 -0.1 1,095,601 + H281DRAFT_00976 0.76 +1.1 1,095,876 + +0.4 1,095,877 - -0.1 1,095,890 + -0.1 1,096,342 + H281DRAFT_00977 0.77 -0.1 1,096,343 - H281DRAFT_00977 0.78 +0.3 1,096,487 + +0.1 1,096,491 - +0.4 1,096,602 + -0.4 1,096,603 - -0.4 1,096,636 + +0.1 1,096,636 + +0.5 1,096,636 + -0.3 1,096,636 + +1.6 1,096,636 + +0.0 1,096,636 + -0.7 1,096,637 - +0.8 1,096,822 + +0.5
Or see this region's nucleotide sequence