Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00976

Experiment: p-Coumaric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00975 and H281DRAFT_00976 are separated by 112 nucleotidesH281DRAFT_00976 and H281DRAFT_00977 are separated by 232 nucleotidesH281DRAFT_00977 and H281DRAFT_00978 are separated by 366 nucleotides H281DRAFT_00975: H281DRAFT_00975 - choline dehydrogenase, at 1,093,117 to 1,094,778 _00975 H281DRAFT_00976: H281DRAFT_00976 - LysR family transcriptional regulator, glycine cleavage system transcriptional activator, at 1,094,891 to 1,095,826 _00976 H281DRAFT_00977: H281DRAFT_00977 - hypothetical protein, at 1,096,059 to 1,096,424 _00977 H281DRAFT_00978: H281DRAFT_00978 - glutathione S-transferase, at 1,096,791 to 1,097,267 _00978 Position (kb) 1094 1095 1096Strain fitness (log2 ratio) -1 0 1at 1094.015 kb on - strand, within H281DRAFT_00975at 1094.090 kb on - strand, within H281DRAFT_00975at 1094.188 kb on + strand, within H281DRAFT_00975at 1094.188 kb on + strand, within H281DRAFT_00975at 1094.530 kb on + strand, within H281DRAFT_00975at 1094.749 kb on + strandat 1095.187 kb on + strand, within H281DRAFT_00976at 1095.601 kb on + strand, within H281DRAFT_00976at 1095.876 kb on + strandat 1095.877 kb on - strandat 1095.890 kb on + strandat 1096.342 kb on + strand, within H281DRAFT_00977at 1096.343 kb on - strand, within H281DRAFT_00977at 1096.487 kb on + strandat 1096.491 kb on - strandat 1096.602 kb on + strandat 1096.603 kb on - strandat 1096.636 kb on + strandat 1096.636 kb on + strandat 1096.636 kb on + strandat 1096.636 kb on + strandat 1096.636 kb on + strandat 1096.636 kb on + strandat 1096.637 kb on - strandat 1096.822 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
remove
1,094,015 - H281DRAFT_00975 0.54 -0.5
1,094,090 - H281DRAFT_00975 0.59 -0.5
1,094,188 + H281DRAFT_00975 0.64 +0.2
1,094,188 + H281DRAFT_00975 0.64 -0.4
1,094,530 + H281DRAFT_00975 0.85 +0.2
1,094,749 + +0.5
1,095,187 + H281DRAFT_00976 0.32 -0.1
1,095,601 + H281DRAFT_00976 0.76 +1.1
1,095,876 + +0.4
1,095,877 - -0.1
1,095,890 + -0.1
1,096,342 + H281DRAFT_00977 0.77 -0.1
1,096,343 - H281DRAFT_00977 0.78 +0.3
1,096,487 + +0.1
1,096,491 - +0.4
1,096,602 + -0.4
1,096,603 - -0.4
1,096,636 + +0.1
1,096,636 + +0.5
1,096,636 + -0.3
1,096,636 + +1.6
1,096,636 + +0.0
1,096,636 + -0.7
1,096,637 - +0.8
1,096,822 + +0.5

Or see this region's nucleotide sequence