Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00707 and H281DRAFT_00708 are separated by 10 nucleotides H281DRAFT_00708 and H281DRAFT_00709 are separated by 205 nucleotides
H281DRAFT_00707: H281DRAFT_00707 - trimethylamine-N-oxide reductase (cytochrome c), at 793,542 to 796,520
_00707
H281DRAFT_00708: H281DRAFT_00708 - Fe-S-cluster-containing dehydrogenase component, at 796,531 to 797,394
_00708
H281DRAFT_00709: H281DRAFT_00709 - transcriptional regulator, TetR family, at 797,600 to 798,259
_00709
Position (kb) 796
797
798 Strain fitness (log2 ratio) -1
0
1 at 796.023 kb on + strand, within H281DRAFT_00707 at 796.024 kb on - strand, within H281DRAFT_00707 at 796.024 kb on - strand, within H281DRAFT_00707 at 796.025 kb on + strand, within H281DRAFT_00707 at 796.103 kb on + strand, within H281DRAFT_00707 at 796.104 kb on - strand, within H281DRAFT_00707 at 796.330 kb on - strand at 796.400 kb on + strand at 796.401 kb on - strand at 796.720 kb on + strand, within H281DRAFT_00708 at 796.721 kb on - strand, within H281DRAFT_00708 at 796.845 kb on + strand, within H281DRAFT_00708 at 796.864 kb on + strand, within H281DRAFT_00708 at 796.865 kb on - strand, within H281DRAFT_00708 at 797.188 kb on + strand, within H281DRAFT_00708 at 797.188 kb on + strand, within H281DRAFT_00708 at 797.288 kb on + strand, within H281DRAFT_00708 at 797.289 kb on - strand, within H281DRAFT_00708 at 797.517 kb on + strand at 797.518 kb on - strand at 797.518 kb on - strand at 797.518 kb on - strand at 797.594 kb on + strand at 797.594 kb on + strand at 797.737 kb on + strand, within H281DRAFT_00709 at 797.781 kb on + strand, within H281DRAFT_00709 at 797.782 kb on - strand, within H281DRAFT_00709 at 797.788 kb on - strand, within H281DRAFT_00709 at 797.788 kb on - strand, within H281DRAFT_00709 at 797.882 kb on + strand, within H281DRAFT_00709 at 797.885 kb on + strand, within H281DRAFT_00709 at 798.017 kb on + strand, within H281DRAFT_00709 at 798.123 kb on + strand, within H281DRAFT_00709 at 798.124 kb on - strand, within H281DRAFT_00709 at 798.124 kb on - strand, within H281DRAFT_00709 at 798.179 kb on - strand, within H281DRAFT_00709 at 798.251 kb on + strand at 798.252 kb on - strand at 798.348 kb on + strand at 798.348 kb on + strand at 798.348 kb on + strand at 798.349 kb on - strand at 798.350 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 796,023 + H281DRAFT_00707 0.83 +0.1 796,024 - H281DRAFT_00707 0.83 -0.9 796,024 - H281DRAFT_00707 0.83 +0.1 796,025 + H281DRAFT_00707 0.83 -0.7 796,103 + H281DRAFT_00707 0.86 +0.3 796,104 - H281DRAFT_00707 0.86 -0.8 796,330 - +0.4 796,400 + +0.0 796,401 - +0.4 796,720 + H281DRAFT_00708 0.22 +0.4 796,721 - H281DRAFT_00708 0.22 -0.4 796,845 + H281DRAFT_00708 0.36 -0.2 796,864 + H281DRAFT_00708 0.39 -0.7 796,865 - H281DRAFT_00708 0.39 +0.3 797,188 + H281DRAFT_00708 0.76 +0.5 797,188 + H281DRAFT_00708 0.76 +0.1 797,288 + H281DRAFT_00708 0.88 +1.3 797,289 - H281DRAFT_00708 0.88 +0.8 797,517 + +0.8 797,518 - -0.2 797,518 - -0.5 797,518 - -0.2 797,594 + +0.4 797,594 + +0.3 797,737 + H281DRAFT_00709 0.21 +0.3 797,781 + H281DRAFT_00709 0.27 +0.5 797,782 - H281DRAFT_00709 0.28 +0.7 797,788 - H281DRAFT_00709 0.28 +0.6 797,788 - H281DRAFT_00709 0.28 +0.3 797,882 + H281DRAFT_00709 0.43 -0.1 797,885 + H281DRAFT_00709 0.43 -0.2 798,017 + H281DRAFT_00709 0.63 +0.2 798,123 + H281DRAFT_00709 0.79 -0.1 798,124 - H281DRAFT_00709 0.79 +0.6 798,124 - H281DRAFT_00709 0.79 +0.3 798,179 - H281DRAFT_00709 0.88 +0.0 798,251 + +0.6 798,252 - +0.2 798,348 + -0.4 798,348 + -0.5 798,348 + +0.5 798,349 - +0.5 798,350 + -0.5
Or see this region's nucleotide sequence