Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00690

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00689 and H281DRAFT_00690 are separated by 132 nucleotidesH281DRAFT_00690 and H281DRAFT_00691 are separated by 33 nucleotidesH281DRAFT_00691 and H281DRAFT_00692 are separated by 84 nucleotidesH281DRAFT_00692 and H281DRAFT_00693 are separated by 256 nucleotidesH281DRAFT_00693 and H281DRAFT_00694 are separated by 0 nucleotides H281DRAFT_00689: H281DRAFT_00689 - transcriptional regulator, AraC family, at 771,802 to 772,686 _00689 H281DRAFT_00690: H281DRAFT_00690 - NADPH:quinone reductase, at 772,819 to 773,781 _00690 H281DRAFT_00691: H281DRAFT_00691 - XapX domain-containing protein, at 773,815 to 773,991 _00691 H281DRAFT_00692: H281DRAFT_00692 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 774,076 to 774,234 _00692 H281DRAFT_00693: H281DRAFT_00693 - hypothetical protein, at 774,491 to 774,778 _00693 H281DRAFT_00694: H281DRAFT_00694 - Transcriptional regulator, at 774,779 to 775,441 _00694 Position (kb) 772 773 774Strain fitness (log2 ratio) -1 0 1at 772.508 kb on + strand, within H281DRAFT_00689at 772.860 kb on - strandat 773.383 kb on + strand, within H281DRAFT_00690at 773.384 kb on - strand, within H281DRAFT_00690at 773.591 kb on + strand, within H281DRAFT_00690at 773.866 kb on + strand, within H281DRAFT_00691at 773.866 kb on + strand, within H281DRAFT_00691at 773.869 kb on - strand, within H281DRAFT_00691at 774.329 kb on + strandat 774.360 kb on + strandat 774.361 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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772,508 + H281DRAFT_00689 0.80 +0.1
772,860 - -0.3
773,383 + H281DRAFT_00690 0.59 +1.2
773,384 - H281DRAFT_00690 0.59 +0.1
773,591 + H281DRAFT_00690 0.80 +0.4
773,866 + H281DRAFT_00691 0.29 -0.1
773,866 + H281DRAFT_00691 0.29 +0.6
773,869 - H281DRAFT_00691 0.31 -0.1
774,329 + -0.1
774,360 + +0.1
774,361 - +1.1

Or see this region's nucleotide sequence