Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00678 and H281DRAFT_00679 are separated by 4 nucleotides H281DRAFT_00679 and H281DRAFT_00680 are separated by 56 nucleotides H281DRAFT_00680 and H281DRAFT_00681 overlap by 4 nucleotides H281DRAFT_00681 and H281DRAFT_00682 overlap by 4 nucleotides
H281DRAFT_00678: H281DRAFT_00678 - hypothetical protein, at 758,428 to 758,790
_00678
H281DRAFT_00679: H281DRAFT_00679 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 758,795 to 759,541
_00679
H281DRAFT_00680: H281DRAFT_00680 - Glycosyltransferases involved in cell wall biogenesis, at 759,598 to 760,251
_00680
H281DRAFT_00681: H281DRAFT_00681 - Dimethyladenosine transferase (rRNA methylation), at 760,248 to 760,856
_00681
H281DRAFT_00682: H281DRAFT_00682 - Acyl-CoA dehydrogenases, at 760,853 to 761,926
_00682
Position (kb) 759
760
761 Strain fitness (log2 ratio) -2
-1
0
1 at 758.845 kb on - strand at 759.000 kb on + strand, within H281DRAFT_00679 at 759.000 kb on + strand, within H281DRAFT_00679 at 759.003 kb on - strand, within H281DRAFT_00679 at 759.242 kb on + strand, within H281DRAFT_00679 at 759.347 kb on - strand, within H281DRAFT_00679 at 759.624 kb on + strand at 759.650 kb on - strand at 759.783 kb on - strand, within H281DRAFT_00680 at 759.846 kb on - strand, within H281DRAFT_00680 at 760.251 kb on + strand at 760.252 kb on - strand at 760.252 kb on - strand at 760.362 kb on + strand, within H281DRAFT_00681 at 760.363 kb on - strand, within H281DRAFT_00681 at 760.379 kb on + strand, within H281DRAFT_00681 at 760.498 kb on + strand, within H281DRAFT_00681 at 760.501 kb on + strand, within H281DRAFT_00681 at 760.501 kb on + strand, within H281DRAFT_00681 at 760.502 kb on - strand, within H281DRAFT_00681 at 760.653 kb on + strand, within H281DRAFT_00681 at 760.654 kb on - strand, within H281DRAFT_00681 at 760.820 kb on - strand at 760.856 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 758,845 - -0.4 759,000 + H281DRAFT_00679 0.27 +0.1 759,000 + H281DRAFT_00679 0.27 -0.0 759,003 - H281DRAFT_00679 0.28 -0.3 759,242 + H281DRAFT_00679 0.60 -2.5 759,347 - H281DRAFT_00679 0.74 -0.3 759,624 + -0.0 759,650 - +1.5 759,783 - H281DRAFT_00680 0.28 +0.5 759,846 - H281DRAFT_00680 0.38 +0.8 760,251 + -0.2 760,252 - +0.5 760,252 - +0.4 760,362 + H281DRAFT_00681 0.19 -0.1 760,363 - H281DRAFT_00681 0.19 +0.4 760,379 + H281DRAFT_00681 0.22 +0.3 760,498 + H281DRAFT_00681 0.41 +0.4 760,501 + H281DRAFT_00681 0.42 -0.1 760,501 + H281DRAFT_00681 0.42 -0.1 760,502 - H281DRAFT_00681 0.42 +0.6 760,653 + H281DRAFT_00681 0.67 -0.3 760,654 - H281DRAFT_00681 0.67 +0.3 760,820 - +0.3 760,856 + -0.4
Or see this region's nucleotide sequence