Strain Fitness in Marinobacter adhaerens HP15 around HP15_906

Experiment: casaminos

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_905 and HP15_906 are separated by 120 nucleotidesHP15_906 and HP15_907 are separated by 93 nucleotides HP15_905: HP15_905 - protein containing helix-turn-helix, AraC domain, at 916,493 to 917,410 _905 HP15_906: HP15_906 - methylmalonate-semialdehyde dehydrogenase, at 917,531 to 919,024 _906 HP15_907: HP15_907 - acyl-CoA dehydrogenase domain protein, at 919,118 to 920,284 _907 Position (kb) 917 918 919 920Strain fitness (log2 ratio) -3 -2 -1 0 1at 916.607 kb on + strand, within HP15_905at 916.647 kb on + strand, within HP15_905at 916.669 kb on + strand, within HP15_905at 916.688 kb on - strand, within HP15_905at 916.698 kb on - strand, within HP15_905at 916.849 kb on - strand, within HP15_905at 916.898 kb on + strand, within HP15_905at 917.034 kb on + strand, within HP15_905at 917.044 kb on - strand, within HP15_905at 917.048 kb on + strand, within HP15_905at 917.055 kb on + strand, within HP15_905at 917.055 kb on + strand, within HP15_905at 917.055 kb on + strand, within HP15_905at 917.063 kb on - strand, within HP15_905at 917.063 kb on - strand, within HP15_905at 917.063 kb on - strand, within HP15_905at 917.069 kb on - strand, within HP15_905at 917.097 kb on - strand, within HP15_905at 917.133 kb on + strand, within HP15_905at 917.133 kb on + strand, within HP15_905at 917.136 kb on - strand, within HP15_905at 917.141 kb on - strand, within HP15_905at 917.183 kb on + strand, within HP15_905at 917.239 kb on + strand, within HP15_905at 917.351 kb on + strandat 917.480 kb on + strandat 917.573 kb on + strandat 917.576 kb on - strandat 917.641 kb on - strandat 917.844 kb on + strand, within HP15_906at 917.844 kb on + strand, within HP15_906at 917.852 kb on - strand, within HP15_906at 917.890 kb on - strand, within HP15_906at 917.900 kb on + strand, within HP15_906at 917.921 kb on + strand, within HP15_906at 918.083 kb on - strand, within HP15_906at 918.102 kb on - strand, within HP15_906at 918.120 kb on - strand, within HP15_906at 918.273 kb on - strand, within HP15_906at 918.362 kb on + strand, within HP15_906at 918.407 kb on + strand, within HP15_906at 918.499 kb on - strand, within HP15_906at 918.543 kb on + strand, within HP15_906at 918.587 kb on + strand, within HP15_906at 918.626 kb on + strand, within HP15_906at 918.821 kb on + strand, within HP15_906at 918.892 kb on + strandat 918.900 kb on - strandat 918.900 kb on - strandat 918.954 kb on + strandat 918.975 kb on + strandat 919.122 kb on + strandat 919.271 kb on + strand, within HP15_907at 919.357 kb on - strand, within HP15_907at 919.365 kb on - strand, within HP15_907at 919.365 kb on - strand, within HP15_907at 919.382 kb on + strand, within HP15_907at 919.894 kb on - strand, within HP15_907at 919.894 kb on - strand, within HP15_907

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos
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916,607 + HP15_905 0.12 -0.2
916,647 + HP15_905 0.17 -0.4
916,669 + HP15_905 0.19 -2.8
916,688 - HP15_905 0.21 -1.3
916,698 - HP15_905 0.22 -1.5
916,849 - HP15_905 0.39 -2.1
916,898 + HP15_905 0.44 -0.8
917,034 + HP15_905 0.59 -0.2
917,044 - HP15_905 0.60 -0.7
917,048 + HP15_905 0.60 -0.5
917,055 + HP15_905 0.61 -0.4
917,055 + HP15_905 0.61 -0.8
917,055 + HP15_905 0.61 -0.4
917,063 - HP15_905 0.62 -0.5
917,063 - HP15_905 0.62 -0.8
917,063 - HP15_905 0.62 -1.1
917,069 - HP15_905 0.63 -1.5
917,097 - HP15_905 0.66 -0.5
917,133 + HP15_905 0.70 -1.3
917,133 + HP15_905 0.70 +0.1
917,136 - HP15_905 0.70 -1.1
917,141 - HP15_905 0.71 -1.1
917,183 + HP15_905 0.75 +0.4
917,239 + HP15_905 0.81 +0.1
917,351 + -0.7
917,480 + -0.7
917,573 + +0.4
917,576 - -2.0
917,641 - -1.5
917,844 + HP15_906 0.21 -0.8
917,844 + HP15_906 0.21 -2.5
917,852 - HP15_906 0.21 -3.3
917,890 - HP15_906 0.24 -0.5
917,900 + HP15_906 0.25 -0.6
917,921 + HP15_906 0.26 -1.0
918,083 - HP15_906 0.37 -1.9
918,102 - HP15_906 0.38 -0.7
918,120 - HP15_906 0.39 -0.9
918,273 - HP15_906 0.50 -1.2
918,362 + HP15_906 0.56 -0.3
918,407 + HP15_906 0.59 -0.7
918,499 - HP15_906 0.65 -0.0
918,543 + HP15_906 0.68 -0.2
918,587 + HP15_906 0.71 +0.0
918,626 + HP15_906 0.73 -1.0
918,821 + HP15_906 0.86 -0.5
918,892 + -0.9
918,900 - -1.3
918,900 - -2.0
918,954 + -0.5
918,975 + -1.1
919,122 + -0.8
919,271 + HP15_907 0.13 -0.1
919,357 - HP15_907 0.20 -1.0
919,365 - HP15_907 0.21 -0.7
919,365 - HP15_907 0.21 +1.1
919,382 + HP15_907 0.23 -0.5
919,894 - HP15_907 0.66 -2.2
919,894 - HP15_907 0.66 -0.8

Or see this region's nucleotide sequence