Experiment: m.b. benzoic 0.145 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00780 and PGA1_c00790 are separated by 58 nucleotides PGA1_c00790 and PGA1_c00800 are separated by 63 nucleotides PGA1_c00800 and PGA1_c00810 are separated by 40 nucleotides
PGA1_c00780: PGA1_c00780 - putative chromosome segregation protein SMC, at 75,090 to 78,545
_c00780
PGA1_c00790: PGA1_c00790 - hypothetical protein, at 78,604 to 79,071
_c00790
PGA1_c00800: PGA1_c00800 - hypothetical protein, at 79,135 to 79,524
_c00800
PGA1_c00810: PGA1_c00810 - putative lytic murein transglycosylase, at 79,565 to 80,737
_c00810
Position (kb) 79
80 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 78.151 kb on + strand, within PGA1_c00780 at 78.276 kb on + strand at 78.284 kb on - strand at 78.309 kb on + strand at 78.506 kb on - strand at 78.541 kb on + strand at 78.568 kb on + strand at 78.637 kb on - strand at 78.642 kb on - strand at 78.653 kb on + strand, within PGA1_c00790 at 78.661 kb on - strand, within PGA1_c00790 at 78.661 kb on - strand, within PGA1_c00790 at 78.661 kb on - strand, within PGA1_c00790 at 78.678 kb on + strand, within PGA1_c00790 at 78.740 kb on + strand, within PGA1_c00790 at 78.772 kb on + strand, within PGA1_c00790 at 78.803 kb on + strand, within PGA1_c00790 at 78.804 kb on + strand, within PGA1_c00790 at 78.811 kb on - strand, within PGA1_c00790 at 78.859 kb on - strand, within PGA1_c00790 at 78.935 kb on - strand, within PGA1_c00790 at 79.037 kb on - strand at 79.065 kb on + strand at 79.075 kb on + strand at 79.075 kb on + strand at 79.075 kb on + strand at 79.083 kb on - strand at 79.083 kb on - strand at 79.133 kb on + strand at 79.186 kb on + strand, within PGA1_c00800 at 79.209 kb on + strand, within PGA1_c00800 at 79.227 kb on - strand, within PGA1_c00800 at 79.244 kb on - strand, within PGA1_c00800 at 79.308 kb on + strand, within PGA1_c00800 at 79.366 kb on + strand, within PGA1_c00800 at 79.374 kb on - strand, within PGA1_c00800 at 79.374 kb on - strand, within PGA1_c00800 at 79.382 kb on - strand, within PGA1_c00800 at 79.428 kb on + strand, within PGA1_c00800 at 79.458 kb on + strand, within PGA1_c00800 at 79.518 kb on + strand at 79.526 kb on - strand at 79.539 kb on + strand at 79.561 kb on - strand at 79.580 kb on - strand at 79.580 kb on - strand at 79.580 kb on - strand at 79.587 kb on + strand at 79.659 kb on + strand at 79.684 kb on + strand, within PGA1_c00810 at 79.684 kb on + strand, within PGA1_c00810 at 79.684 kb on + strand, within PGA1_c00810 at 79.684 kb on + strand, within PGA1_c00810 at 79.761 kb on + strand, within PGA1_c00810 at 79.813 kb on + strand, within PGA1_c00810 at 79.813 kb on + strand, within PGA1_c00810 at 79.821 kb on - strand, within PGA1_c00810 at 79.826 kb on + strand, within PGA1_c00810 at 79.898 kb on - strand, within PGA1_c00810 at 79.988 kb on + strand, within PGA1_c00810 at 80.104 kb on - strand, within PGA1_c00810 at 80.191 kb on - strand, within PGA1_c00810 at 80.191 kb on - strand, within PGA1_c00810 at 80.191 kb on - strand, within PGA1_c00810 at 80.257 kb on + strand, within PGA1_c00810 at 80.276 kb on - strand, within PGA1_c00810 at 80.422 kb on + strand, within PGA1_c00810 at 80.430 kb on - strand, within PGA1_c00810 at 80.430 kb on - strand, within PGA1_c00810 at 80.430 kb on - strand, within PGA1_c00810
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.145 mg/ml remove 78,151 + PGA1_c00780 0.89 -0.3 78,276 + -0.7 78,284 - -0.4 78,309 + -1.1 78,506 - -2.1 78,541 + +0.9 78,568 + -0.3 78,637 - -1.6 78,642 - +2.7 78,653 + PGA1_c00790 0.10 -1.0 78,661 - PGA1_c00790 0.12 +0.1 78,661 - PGA1_c00790 0.12 -0.3 78,661 - PGA1_c00790 0.12 +0.2 78,678 + PGA1_c00790 0.16 +2.3 78,740 + PGA1_c00790 0.29 +0.1 78,772 + PGA1_c00790 0.36 +0.1 78,803 + PGA1_c00790 0.43 -0.2 78,804 + PGA1_c00790 0.43 -0.9 78,811 - PGA1_c00790 0.44 -1.3 78,859 - PGA1_c00790 0.54 +1.9 78,935 - PGA1_c00790 0.71 -0.7 79,037 - -0.3 79,065 + +0.6 79,075 + +0.2 79,075 + -1.0 79,075 + -0.2 79,083 - +1.0 79,083 - +0.7 79,133 + -1.1 79,186 + PGA1_c00800 0.13 -0.3 79,209 + PGA1_c00800 0.19 +0.3 79,227 - PGA1_c00800 0.24 +0.7 79,244 - PGA1_c00800 0.28 -1.1 79,308 + PGA1_c00800 0.44 +1.6 79,366 + PGA1_c00800 0.59 -0.9 79,374 - PGA1_c00800 0.61 +1.1 79,374 - PGA1_c00800 0.61 +0.4 79,382 - PGA1_c00800 0.63 +1.4 79,428 + PGA1_c00800 0.75 +0.5 79,458 + PGA1_c00800 0.83 -0.6 79,518 + -0.9 79,526 - -0.1 79,539 + -0.6 79,561 - +0.7 79,580 - +0.1 79,580 - +0.4 79,580 - +1.7 79,587 + +0.8 79,659 + -0.2 79,684 + PGA1_c00810 0.10 +0.3 79,684 + PGA1_c00810 0.10 -2.5 79,684 + PGA1_c00810 0.10 -0.2 79,684 + PGA1_c00810 0.10 -1.6 79,761 + PGA1_c00810 0.17 +0.1 79,813 + PGA1_c00810 0.21 -0.3 79,813 + PGA1_c00810 0.21 -1.3 79,821 - PGA1_c00810 0.22 -0.1 79,826 + PGA1_c00810 0.22 -1.9 79,898 - PGA1_c00810 0.28 -3.1 79,988 + PGA1_c00810 0.36 -0.1 80,104 - PGA1_c00810 0.46 -1.5 80,191 - PGA1_c00810 0.53 +1.2 80,191 - PGA1_c00810 0.53 -0.6 80,191 - PGA1_c00810 0.53 +0.6 80,257 + PGA1_c00810 0.59 -1.0 80,276 - PGA1_c00810 0.61 -1.2 80,422 + PGA1_c00810 0.73 -0.6 80,430 - PGA1_c00810 0.74 +0.9 80,430 - PGA1_c00810 0.74 -0.3 80,430 - PGA1_c00810 0.74 -2.5
Or see this region's nucleotide sequence