Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06700

Experiment: m.b. benzoic 0.145 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06690 and PGA1_c06700 are separated by 224 nucleotidesPGA1_c06700 and PGA1_c06710 are separated by 143 nucleotides PGA1_c06690: PGA1_c06690 - prephenate deydrogenase-like protein, at 686,417 to 687,202 _c06690 PGA1_c06700: PGA1_c06700 - Integral membrane protein, at 687,427 to 687,912 _c06700 PGA1_c06710: PGA1_c06710 - cytochrome c oxidase subunit 1-beta, at 688,056 to 689,729 _c06710 Position (kb) 687 688Strain fitness (log2 ratio) -2 -1 0 1 2at 686.441 kb on + strandat 686.441 kb on + strandat 686.502 kb on - strand, within PGA1_c06690at 686.544 kb on + strand, within PGA1_c06690at 686.547 kb on - strand, within PGA1_c06690at 686.564 kb on - strand, within PGA1_c06690at 686.583 kb on - strand, within PGA1_c06690at 686.607 kb on - strand, within PGA1_c06690at 686.677 kb on - strand, within PGA1_c06690at 686.677 kb on - strand, within PGA1_c06690at 686.683 kb on - strand, within PGA1_c06690at 686.699 kb on + strand, within PGA1_c06690at 686.726 kb on - strand, within PGA1_c06690at 686.726 kb on - strand, within PGA1_c06690at 686.728 kb on + strand, within PGA1_c06690at 686.736 kb on - strand, within PGA1_c06690at 686.736 kb on - strand, within PGA1_c06690at 686.747 kb on + strand, within PGA1_c06690at 686.786 kb on - strand, within PGA1_c06690at 686.838 kb on + strand, within PGA1_c06690at 686.846 kb on + strand, within PGA1_c06690at 686.846 kb on + strand, within PGA1_c06690at 686.851 kb on + strand, within PGA1_c06690at 686.854 kb on - strand, within PGA1_c06690at 686.962 kb on - strand, within PGA1_c06690at 686.975 kb on + strand, within PGA1_c06690at 687.035 kb on - strand, within PGA1_c06690at 687.120 kb on + strand, within PGA1_c06690at 687.127 kb on + strandat 687.169 kb on + strandat 687.177 kb on - strandat 687.177 kb on - strandat 687.177 kb on - strandat 687.182 kb on + strandat 687.192 kb on + strandat 687.192 kb on + strandat 687.217 kb on + strandat 687.257 kb on + strandat 687.265 kb on - strandat 687.288 kb on + strandat 687.325 kb on - strandat 687.325 kb on - strandat 687.364 kb on + strandat 687.372 kb on - strandat 687.372 kb on - strandat 687.392 kb on + strandat 687.426 kb on + strandat 687.480 kb on - strand, within PGA1_c06700at 687.518 kb on + strand, within PGA1_c06700at 687.526 kb on - strand, within PGA1_c06700at 687.528 kb on + strand, within PGA1_c06700at 687.528 kb on + strand, within PGA1_c06700at 687.528 kb on + strand, within PGA1_c06700at 687.536 kb on - strand, within PGA1_c06700at 687.536 kb on - strand, within PGA1_c06700at 687.609 kb on - strand, within PGA1_c06700at 687.609 kb on - strand, within PGA1_c06700at 687.651 kb on + strand, within PGA1_c06700at 687.651 kb on + strand, within PGA1_c06700at 687.651 kb on + strand, within PGA1_c06700at 687.659 kb on - strand, within PGA1_c06700at 687.659 kb on - strand, within PGA1_c06700at 687.739 kb on + strand, within PGA1_c06700at 687.747 kb on - strand, within PGA1_c06700at 687.757 kb on - strand, within PGA1_c06700at 687.764 kb on + strand, within PGA1_c06700at 687.764 kb on - strand, within PGA1_c06700at 687.829 kb on + strand, within PGA1_c06700at 687.829 kb on + strand, within PGA1_c06700at 687.829 kb on + strand, within PGA1_c06700at 687.863 kb on - strand, within PGA1_c06700at 687.878 kb on + strandat 687.878 kb on + strandat 687.926 kb on + strandat 687.942 kb on + strandat 687.950 kb on + strandat 687.950 kb on + strandat 687.950 kb on - strandat 687.950 kb on - strandat 687.955 kb on - strandat 688.082 kb on - strandat 688.699 kb on + strand, within PGA1_c06710

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.145 mg/ml
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686,441 + +0.6
686,441 + -1.6
686,502 - PGA1_c06690 0.11 +1.2
686,544 + PGA1_c06690 0.16 +0.1
686,547 - PGA1_c06690 0.17 +0.5
686,564 - PGA1_c06690 0.19 -0.1
686,583 - PGA1_c06690 0.21 -0.7
686,607 - PGA1_c06690 0.24 +0.0
686,677 - PGA1_c06690 0.33 -1.0
686,677 - PGA1_c06690 0.33 -0.3
686,683 - PGA1_c06690 0.34 +0.6
686,699 + PGA1_c06690 0.36 +0.9
686,726 - PGA1_c06690 0.39 -0.6
686,726 - PGA1_c06690 0.39 -0.5
686,728 + PGA1_c06690 0.40 +0.9
686,736 - PGA1_c06690 0.41 +0.0
686,736 - PGA1_c06690 0.41 -1.0
686,747 + PGA1_c06690 0.42 -1.6
686,786 - PGA1_c06690 0.47 -0.4
686,838 + PGA1_c06690 0.54 -0.1
686,846 + PGA1_c06690 0.55 -0.4
686,846 + PGA1_c06690 0.55 +0.4
686,851 + PGA1_c06690 0.55 +1.6
686,854 - PGA1_c06690 0.56 +0.4
686,962 - PGA1_c06690 0.69 -2.5
686,975 + PGA1_c06690 0.71 +0.6
687,035 - PGA1_c06690 0.79 +0.6
687,120 + PGA1_c06690 0.89 +0.5
687,127 + +0.4
687,169 + +1.6
687,177 - +0.5
687,177 - -0.8
687,177 - +0.2
687,182 + +1.1
687,192 + +0.0
687,192 + -0.4
687,217 + -1.9
687,257 + +0.3
687,265 - +1.1
687,288 + +0.7
687,325 - +0.4
687,325 - -0.4
687,364 + +1.2
687,372 - +0.2
687,372 - +0.9
687,392 + +2.0
687,426 + +1.2
687,480 - PGA1_c06700 0.11 -1.4
687,518 + PGA1_c06700 0.19 -0.4
687,526 - PGA1_c06700 0.20 +0.8
687,528 + PGA1_c06700 0.21 -2.0
687,528 + PGA1_c06700 0.21 -2.1
687,528 + PGA1_c06700 0.21 -0.7
687,536 - PGA1_c06700 0.22 +0.1
687,536 - PGA1_c06700 0.22 -1.1
687,609 - PGA1_c06700 0.37 -0.4
687,609 - PGA1_c06700 0.37 -0.1
687,651 + PGA1_c06700 0.46 -1.9
687,651 + PGA1_c06700 0.46 +0.8
687,651 + PGA1_c06700 0.46 -1.7
687,659 - PGA1_c06700 0.48 -0.4
687,659 - PGA1_c06700 0.48 -0.7
687,739 + PGA1_c06700 0.64 -0.6
687,747 - PGA1_c06700 0.66 +0.1
687,757 - PGA1_c06700 0.68 +0.4
687,764 + PGA1_c06700 0.69 -0.8
687,764 - PGA1_c06700 0.69 +0.7
687,829 + PGA1_c06700 0.83 -1.2
687,829 + PGA1_c06700 0.83 +0.6
687,829 + PGA1_c06700 0.83 -0.5
687,863 - PGA1_c06700 0.90 -0.7
687,878 + +0.9
687,878 + +0.0
687,926 + -0.3
687,942 + -0.1
687,950 + +0.2
687,950 + +0.6
687,950 - +0.2
687,950 - -0.4
687,955 - -1.1
688,082 - +0.6
688,699 + PGA1_c06710 0.38 -0.4

Or see this region's nucleotide sequence