Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04240

Experiment: m.b. benzoic 0.145 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c04220 and PGA1_c04230 are separated by 43 nucleotidesPGA1_c04230 and PGA1_c04240 are separated by 108 nucleotidesPGA1_c04240 and PGA1_c04250 overlap by 1 nucleotidesPGA1_c04250 and PGA1_c04260 are separated by 3 nucleotides PGA1_c04220: PGA1_c04220 - putative phosphonate metabolism, at 409,935 to 410,549 _c04220 PGA1_c04230: PGA1_c04230 - putative phosphonates metabolism transcriptional regulator phnF, at 410,593 to 411,327 _c04230 PGA1_c04240: PGA1_c04240 - protein PhnG, at 411,436 to 411,912 _c04240 PGA1_c04250: PGA1_c04250 - protein PhnH, at 411,912 to 412,508 _c04250 PGA1_c04260: PGA1_c04260 - protein PhnI, at 412,512 to 413,621 _c04260 Position (kb) 411 412Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 410.483 kb on + strand, within PGA1_c04220at 410.491 kb on - strandat 410.496 kb on + strandat 410.518 kb on + strandat 410.549 kb on + strandat 410.557 kb on - strandat 410.559 kb on + strandat 410.572 kb on - strandat 410.631 kb on + strandat 410.639 kb on - strandat 410.639 kb on - strandat 410.639 kb on - strandat 410.657 kb on + strandat 410.706 kb on + strand, within PGA1_c04230at 410.707 kb on - strand, within PGA1_c04230at 410.709 kb on - strand, within PGA1_c04230at 410.768 kb on + strand, within PGA1_c04230at 410.768 kb on - strand, within PGA1_c04230at 410.832 kb on - strand, within PGA1_c04230at 411.003 kb on + strand, within PGA1_c04230at 411.016 kb on + strand, within PGA1_c04230at 411.129 kb on + strand, within PGA1_c04230at 411.129 kb on + strand, within PGA1_c04230at 411.164 kb on - strand, within PGA1_c04230at 411.165 kb on - strand, within PGA1_c04230at 411.184 kb on - strand, within PGA1_c04230at 411.194 kb on + strand, within PGA1_c04230at 411.209 kb on - strand, within PGA1_c04230at 411.268 kb on - strandat 411.361 kb on + strandat 411.361 kb on + strandat 411.361 kb on + strandat 411.369 kb on - strandat 411.369 kb on - strandat 411.369 kb on - strandat 411.424 kb on + strandat 411.424 kb on + strandat 411.432 kb on - strandat 411.433 kb on - strandat 411.452 kb on + strandat 411.486 kb on + strand, within PGA1_c04240at 411.500 kb on - strand, within PGA1_c04240at 411.501 kb on - strand, within PGA1_c04240at 411.568 kb on + strand, within PGA1_c04240at 411.594 kb on + strand, within PGA1_c04240at 411.608 kb on + strand, within PGA1_c04240at 411.640 kb on + strand, within PGA1_c04240at 411.648 kb on - strand, within PGA1_c04240at 411.740 kb on - strand, within PGA1_c04240at 411.814 kb on + strand, within PGA1_c04240at 411.816 kb on - strand, within PGA1_c04240at 411.838 kb on + strand, within PGA1_c04240at 411.906 kb on + strandat 411.931 kb on - strandat 412.031 kb on + strand, within PGA1_c04250at 412.031 kb on + strand, within PGA1_c04250at 412.047 kb on - strand, within PGA1_c04250at 412.086 kb on - strand, within PGA1_c04250at 412.151 kb on - strand, within PGA1_c04250at 412.179 kb on + strand, within PGA1_c04250at 412.179 kb on + strand, within PGA1_c04250at 412.179 kb on - strand, within PGA1_c04250at 412.187 kb on - strand, within PGA1_c04250at 412.187 kb on - strand, within PGA1_c04250at 412.189 kb on + strand, within PGA1_c04250at 412.197 kb on - strand, within PGA1_c04250at 412.222 kb on + strand, within PGA1_c04250at 412.223 kb on - strand, within PGA1_c04250at 412.230 kb on - strand, within PGA1_c04250at 412.238 kb on + strand, within PGA1_c04250at 412.258 kb on + strand, within PGA1_c04250at 412.309 kb on - strand, within PGA1_c04250at 412.347 kb on - strand, within PGA1_c04250at 412.354 kb on - strand, within PGA1_c04250at 412.355 kb on - strand, within PGA1_c04250at 412.402 kb on - strand, within PGA1_c04250at 412.459 kb on - strandat 412.463 kb on + strandat 412.463 kb on + strandat 412.463 kb on + strandat 412.463 kb on + strandat 412.471 kb on - strandat 412.490 kb on + strandat 412.579 kb on + strandat 412.602 kb on + strandat 412.610 kb on - strandat 412.610 kb on - strandat 412.614 kb on + strandat 412.639 kb on - strand, within PGA1_c04260at 412.652 kb on + strand, within PGA1_c04260at 412.658 kb on + strand, within PGA1_c04260at 412.658 kb on + strand, within PGA1_c04260at 412.658 kb on + strand, within PGA1_c04260at 412.660 kb on - strand, within PGA1_c04260at 412.719 kb on + strand, within PGA1_c04260at 412.727 kb on - strand, within PGA1_c04260at 412.727 kb on - strand, within PGA1_c04260at 412.833 kb on + strand, within PGA1_c04260at 412.855 kb on + strand, within PGA1_c04260at 412.870 kb on - strand, within PGA1_c04260

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.145 mg/ml
remove
410,483 + PGA1_c04220 0.89 +2.8
410,491 - +0.7
410,496 + -0.5
410,518 + +1.0
410,549 + +0.2
410,557 - -0.7
410,559 + +2.0
410,572 - +0.4
410,631 + -0.3
410,639 - -0.4
410,639 - +0.8
410,639 - -0.7
410,657 + +0.1
410,706 + PGA1_c04230 0.15 +1.7
410,707 - PGA1_c04230 0.16 -0.6
410,709 - PGA1_c04230 0.16 -0.3
410,768 + PGA1_c04230 0.24 +0.0
410,768 - PGA1_c04230 0.24 -0.2
410,832 - PGA1_c04230 0.33 +0.9
411,003 + PGA1_c04230 0.56 +0.5
411,016 + PGA1_c04230 0.58 +0.0
411,129 + PGA1_c04230 0.73 -0.9
411,129 + PGA1_c04230 0.73 +1.6
411,164 - PGA1_c04230 0.78 -0.4
411,165 - PGA1_c04230 0.78 +0.2
411,184 - PGA1_c04230 0.80 +0.6
411,194 + PGA1_c04230 0.82 -0.1
411,209 - PGA1_c04230 0.84 -0.0
411,268 - -0.7
411,361 + +1.2
411,361 + +0.4
411,361 + -0.2
411,369 - -0.5
411,369 - +0.7
411,369 - +0.5
411,424 + -1.0
411,424 + -0.2
411,432 - -0.2
411,433 - -1.9
411,452 + -3.3
411,486 + PGA1_c04240 0.10 +0.3
411,500 - PGA1_c04240 0.13 +1.2
411,501 - PGA1_c04240 0.14 -0.0
411,568 + PGA1_c04240 0.28 +1.5
411,594 + PGA1_c04240 0.33 +0.9
411,608 + PGA1_c04240 0.36 -0.3
411,640 + PGA1_c04240 0.43 +0.3
411,648 - PGA1_c04240 0.44 +0.9
411,740 - PGA1_c04240 0.64 -0.2
411,814 + PGA1_c04240 0.79 +0.6
411,816 - PGA1_c04240 0.80 +0.7
411,838 + PGA1_c04240 0.84 +1.3
411,906 + +0.8
411,931 - -0.5
412,031 + PGA1_c04250 0.20 -1.2
412,031 + PGA1_c04250 0.20 -0.5
412,047 - PGA1_c04250 0.23 -0.1
412,086 - PGA1_c04250 0.29 -0.3
412,151 - PGA1_c04250 0.40 +0.2
412,179 + PGA1_c04250 0.45 -0.7
412,179 + PGA1_c04250 0.45 +0.3
412,179 - PGA1_c04250 0.45 -1.3
412,187 - PGA1_c04250 0.46 +0.7
412,187 - PGA1_c04250 0.46 -0.3
412,189 + PGA1_c04250 0.46 +1.0
412,197 - PGA1_c04250 0.48 -0.2
412,222 + PGA1_c04250 0.52 +0.2
412,223 - PGA1_c04250 0.52 +1.4
412,230 - PGA1_c04250 0.53 -0.6
412,238 + PGA1_c04250 0.55 -0.3
412,258 + PGA1_c04250 0.58 -0.8
412,309 - PGA1_c04250 0.66 +0.7
412,347 - PGA1_c04250 0.73 +1.2
412,354 - PGA1_c04250 0.74 -0.7
412,355 - PGA1_c04250 0.74 +0.8
412,402 - PGA1_c04250 0.82 +0.7
412,459 - -0.6
412,463 + -0.1
412,463 + +1.0
412,463 + -0.3
412,463 + -1.3
412,471 - -1.9
412,490 + +1.7
412,579 + +0.9
412,602 + +0.1
412,610 - +0.4
412,610 - +0.1
412,614 + +0.7
412,639 - PGA1_c04260 0.11 -0.6
412,652 + PGA1_c04260 0.13 -0.3
412,658 + PGA1_c04260 0.13 +0.8
412,658 + PGA1_c04260 0.13 -2.4
412,658 + PGA1_c04260 0.13 -0.3
412,660 - PGA1_c04260 0.13 -0.7
412,719 + PGA1_c04260 0.19 -1.1
412,727 - PGA1_c04260 0.19 +1.2
412,727 - PGA1_c04260 0.19 -0.6
412,833 + PGA1_c04260 0.29 -0.5
412,855 + PGA1_c04260 0.31 +0.5
412,870 - PGA1_c04260 0.32 -0.8

Or see this region's nucleotide sequence