Experiment: m.b. benzoic 0.145 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00240 and PGA1_65p00250 are separated by 3 nucleotides PGA1_65p00250 and PGA1_65p00260 are separated by 129 nucleotides PGA1_65p00260 and PGA1_65p00270 are separated by 68 nucleotides
PGA1_65p00240: PGA1_65p00240 - dTDP-glucose 4,6-dehydratase RffG, at 30,754 to 31,806
_65p00240
PGA1_65p00250: PGA1_65p00250 - dTDP-4-dehydrorhamnose 3,5-epimerase RfbC, at 31,810 to 32,445
_65p00250
PGA1_65p00260: PGA1_65p00260 - putative metallopeptidase, at 32,575 to 34,026
_65p00260
PGA1_65p00270: PGA1_65p00270 - Hemolysin-type calcium-binding repeat (2 copies)., at 34,095 to 36,314
_65p00270
Position (kb) 32
33
34
35 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 31.652 kb on - strand, within PGA1_65p00240 at 31.698 kb on + strand, within PGA1_65p00240 at 31.969 kb on + strand, within PGA1_65p00250 at 32.372 kb on + strand, within PGA1_65p00250 at 32.380 kb on - strand, within PGA1_65p00250 at 32.393 kb on + strand at 32.456 kb on + strand at 32.464 kb on - strand at 32.469 kb on - strand at 32.537 kb on + strand at 32.574 kb on + strand at 32.632 kb on - strand at 32.805 kb on - strand, within PGA1_65p00260 at 32.851 kb on + strand, within PGA1_65p00260 at 32.859 kb on - strand, within PGA1_65p00260 at 33.046 kb on + strand, within PGA1_65p00260 at 33.051 kb on + strand, within PGA1_65p00260 at 33.082 kb on - strand, within PGA1_65p00260 at 33.104 kb on + strand, within PGA1_65p00260 at 33.112 kb on - strand, within PGA1_65p00260 at 33.154 kb on + strand, within PGA1_65p00260 at 33.177 kb on - strand, within PGA1_65p00260 at 33.182 kb on - strand, within PGA1_65p00260 at 33.320 kb on + strand, within PGA1_65p00260 at 33.518 kb on + strand, within PGA1_65p00260 at 33.526 kb on - strand, within PGA1_65p00260 at 33.553 kb on + strand, within PGA1_65p00260 at 33.604 kb on + strand, within PGA1_65p00260 at 33.645 kb on + strand, within PGA1_65p00260 at 33.999 kb on + strand at 34.052 kb on + strand at 34.697 kb on - strand, within PGA1_65p00270 at 34.969 kb on - strand, within PGA1_65p00270 at 35.002 kb on - strand, within PGA1_65p00270 at 35.002 kb on - strand, within PGA1_65p00270 at 35.004 kb on + strand, within PGA1_65p00270 at 35.004 kb on + strand, within PGA1_65p00270 at 35.004 kb on + strand, within PGA1_65p00270 at 35.004 kb on + strand, within PGA1_65p00270 at 35.012 kb on - strand, within PGA1_65p00270 at 35.012 kb on - strand, within PGA1_65p00270 at 35.012 kb on - strand, within PGA1_65p00270 at 35.012 kb on - strand, within PGA1_65p00270 at 35.012 kb on - strand, within PGA1_65p00270 at 35.012 kb on - strand, within PGA1_65p00270
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.145 mg/ml remove 31,652 - PGA1_65p00240 0.85 -1.3 31,698 + PGA1_65p00240 0.90 +1.3 31,969 + PGA1_65p00250 0.25 -1.6 32,372 + PGA1_65p00250 0.88 +1.2 32,380 - PGA1_65p00250 0.90 -0.6 32,393 + +0.7 32,456 + -0.8 32,464 - +1.0 32,469 - +0.7 32,537 + +0.5 32,574 + +0.3 32,632 - +1.7 32,805 - PGA1_65p00260 0.16 +1.0 32,851 + PGA1_65p00260 0.19 -0.1 32,859 - PGA1_65p00260 0.20 +0.7 33,046 + PGA1_65p00260 0.32 -2.4 33,051 + PGA1_65p00260 0.33 +1.9 33,082 - PGA1_65p00260 0.35 +0.9 33,104 + PGA1_65p00260 0.36 -1.6 33,112 - PGA1_65p00260 0.37 +0.4 33,154 + PGA1_65p00260 0.40 +0.4 33,177 - PGA1_65p00260 0.41 +0.7 33,182 - PGA1_65p00260 0.42 +0.2 33,320 + PGA1_65p00260 0.51 +0.3 33,518 + PGA1_65p00260 0.65 +0.2 33,526 - PGA1_65p00260 0.65 +1.4 33,553 + PGA1_65p00260 0.67 +1.1 33,604 + PGA1_65p00260 0.71 +0.2 33,645 + PGA1_65p00260 0.74 +0.2 33,999 + -0.8 34,052 + +0.5 34,697 - PGA1_65p00270 0.27 +0.4 34,969 - PGA1_65p00270 0.39 -0.4 35,002 - PGA1_65p00270 0.41 -0.0 35,002 - PGA1_65p00270 0.41 +0.7 35,004 + PGA1_65p00270 0.41 +3.1 35,004 + PGA1_65p00270 0.41 -0.1 35,004 + PGA1_65p00270 0.41 +0.7 35,004 + PGA1_65p00270 0.41 +0.4 35,012 - PGA1_65p00270 0.41 -1.8 35,012 - PGA1_65p00270 0.41 +0.7 35,012 - PGA1_65p00270 0.41 +1.2 35,012 - PGA1_65p00270 0.41 -0.0 35,012 - PGA1_65p00270 0.41 -1.6 35,012 - PGA1_65p00270 0.41 +0.5
Or see this region's nucleotide sequence