Experiment: m.b. benzoic 0.145 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02060 and PGA1_262p02070 are separated by 235 nucleotides PGA1_262p02070 and PGA1_262p02080 are separated by 236 nucleotides PGA1_262p02080 and PGA1_262p02090 overlap by 4 nucleotides PGA1_262p02090 and PGA1_262p02100 are separated by 37 nucleotides
PGA1_262p02060: PGA1_262p02060 - transposase, at 223,853 to 225,382
_262p02060
PGA1_262p02070: PGA1_262p02070 - hypothetical protein, at 225,618 to 225,896
_262p02070
PGA1_262p02080: PGA1_262p02080 - hypothetical protein, at 226,133 to 226,477
_262p02080
PGA1_262p02090: PGA1_262p02090 - response regulator receiver domain-containing protein, at 226,474 to 226,860
_262p02090
PGA1_262p02100: PGA1_262p02100 - methyltransferase, cheR type, at 226,898 to 227,761
_262p02100
Position (kb) 226
227 Strain fitness (log2 ratio) -1
0
1
2 at 225.580 kb on + strand at 225.582 kb on - strand at 225.585 kb on + strand at 225.611 kb on + strand at 225.612 kb on + strand at 225.764 kb on - strand, within PGA1_262p02070 at 225.765 kb on - strand, within PGA1_262p02070 at 226.107 kb on - strand at 226.107 kb on - strand at 226.117 kb on - strand at 226.136 kb on + strand at 226.136 kb on + strand at 226.136 kb on + strand at 226.136 kb on + strand at 226.144 kb on - strand at 226.159 kb on + strand at 226.210 kb on - strand, within PGA1_262p02080 at 226.283 kb on - strand, within PGA1_262p02080 at 226.283 kb on - strand, within PGA1_262p02080 at 226.288 kb on - strand, within PGA1_262p02080 at 226.294 kb on + strand, within PGA1_262p02080 at 226.302 kb on - strand, within PGA1_262p02080 at 226.328 kb on + strand, within PGA1_262p02080 at 226.400 kb on + strand, within PGA1_262p02080 at 226.418 kb on - strand, within PGA1_262p02080 at 226.422 kb on + strand, within PGA1_262p02080 at 226.522 kb on + strand, within PGA1_262p02090 at 226.606 kb on + strand, within PGA1_262p02090 at 226.629 kb on + strand, within PGA1_262p02090 at 226.665 kb on - strand, within PGA1_262p02090 at 226.689 kb on - strand, within PGA1_262p02090 at 226.779 kb on + strand, within PGA1_262p02090 at 226.787 kb on - strand, within PGA1_262p02090 at 226.824 kb on - strand at 226.896 kb on + strand at 226.896 kb on + strand at 226.899 kb on - strand at 226.902 kb on - strand at 226.902 kb on - strand at 226.904 kb on - strand at 226.904 kb on - strand at 226.904 kb on - strand at 226.904 kb on - strand at 226.949 kb on + strand at 226.976 kb on - strand at 227.014 kb on + strand, within PGA1_262p02100 at 227.014 kb on + strand, within PGA1_262p02100 at 227.022 kb on - strand, within PGA1_262p02100 at 227.124 kb on + strand, within PGA1_262p02100 at 227.143 kb on + strand at 227.143 kb on + strand, within PGA1_262p02100 at 227.143 kb on + strand, within PGA1_262p02100 at 227.151 kb on - strand, within PGA1_262p02100 at 227.151 kb on - strand, within PGA1_262p02100 at 227.181 kb on + strand, within PGA1_262p02100 at 227.245 kb on - strand, within PGA1_262p02100 at 227.247 kb on + strand, within PGA1_262p02100 at 227.339 kb on - strand, within PGA1_262p02100 at 227.371 kb on + strand, within PGA1_262p02100 at 227.371 kb on - strand, within PGA1_262p02100 at 227.371 kb on - strand, within PGA1_262p02100 at 227.372 kb on - strand, within PGA1_262p02100 at 227.372 kb on - strand, within PGA1_262p02100 at 227.397 kb on + strand, within PGA1_262p02100 at 227.397 kb on + strand, within PGA1_262p02100 at 227.405 kb on - strand, within PGA1_262p02100 at 227.405 kb on - strand, within PGA1_262p02100
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.145 mg/ml remove 225,580 + -0.6 225,582 - -1.0 225,585 + -1.1 225,611 + +2.0 225,612 + -1.7 225,764 - PGA1_262p02070 0.52 -0.6 225,765 - PGA1_262p02070 0.53 -0.4 226,107 - -1.0 226,107 - +0.7 226,117 - +0.7 226,136 + -0.3 226,136 + +0.3 226,136 + +0.2 226,136 + -0.0 226,144 - -1.3 226,159 + -0.8 226,210 - PGA1_262p02080 0.22 -0.3 226,283 - PGA1_262p02080 0.43 +0.2 226,283 - PGA1_262p02080 0.43 -0.0 226,288 - PGA1_262p02080 0.45 -1.4 226,294 + PGA1_262p02080 0.47 -0.7 226,302 - PGA1_262p02080 0.49 +0.9 226,328 + PGA1_262p02080 0.57 +0.6 226,400 + PGA1_262p02080 0.77 +0.3 226,418 - PGA1_262p02080 0.83 +1.1 226,422 + PGA1_262p02080 0.84 +2.2 226,522 + PGA1_262p02090 0.12 -0.7 226,606 + PGA1_262p02090 0.34 -1.1 226,629 + PGA1_262p02090 0.40 +1.0 226,665 - PGA1_262p02090 0.49 +1.4 226,689 - PGA1_262p02090 0.56 -0.8 226,779 + PGA1_262p02090 0.79 +0.7 226,787 - PGA1_262p02090 0.81 -0.9 226,824 - +0.5 226,896 + -0.7 226,896 + +0.3 226,899 - -1.0 226,902 - -0.9 226,902 - +0.1 226,904 - -1.3 226,904 - +0.9 226,904 - +0.9 226,904 - -1.6 226,949 + -0.9 226,976 - -0.6 227,014 + PGA1_262p02100 0.13 +0.8 227,014 + PGA1_262p02100 0.13 -1.7 227,022 - PGA1_262p02100 0.14 +0.3 227,124 + PGA1_262p02100 0.26 -0.4 227,143 + +0.3 227,143 + PGA1_262p02100 0.28 -0.8 227,143 + PGA1_262p02100 0.28 -0.9 227,151 - PGA1_262p02100 0.29 +0.8 227,151 - PGA1_262p02100 0.29 -0.3 227,181 + PGA1_262p02100 0.33 -1.0 227,245 - PGA1_262p02100 0.40 +1.6 227,247 + PGA1_262p02100 0.40 -0.7 227,339 - PGA1_262p02100 0.51 -0.1 227,371 + PGA1_262p02100 0.55 -0.7 227,371 - PGA1_262p02100 0.55 +1.2 227,371 - PGA1_262p02100 0.55 +0.3 227,372 - PGA1_262p02100 0.55 -0.5 227,372 - PGA1_262p02100 0.55 -0.3 227,397 + PGA1_262p02100 0.58 -0.4 227,397 + PGA1_262p02100 0.58 +0.9 227,405 - PGA1_262p02100 0.59 +0.2 227,405 - PGA1_262p02100 0.59 -0.2
Or see this region's nucleotide sequence