Experiment: m.b. benzoic 0.145 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01580 and PGA1_262p01590 are separated by 28 nucleotides PGA1_262p01590 and PGA1_262p01600 are separated by 6 nucleotides PGA1_262p01600 and PGA1_262p01610 overlap by 4 nucleotides
PGA1_262p01580: PGA1_262p01580 - putative metal ion uptake regulator, at 175,844 to 176,230
_262p01580
PGA1_262p01590: PGA1_262p01590 - Protein of unknown function (DUF2796)., at 176,259 to 176,930
_262p01590
PGA1_262p01600: PGA1_262p01600 - putative ABC transporter, ATP binding protein, at 176,937 to 177,632
_262p01600
PGA1_262p01610: PGA1_262p01610 - putative ABC transporter, permease protein, at 177,629 to 178,879
_262p01610
Position (kb) 176
177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 176.150 kb on + strand, within PGA1_262p01580 at 176.308 kb on - strand at 176.309 kb on + strand at 176.425 kb on + strand, within PGA1_262p01590 at 176.425 kb on + strand, within PGA1_262p01590 at 176.494 kb on - strand, within PGA1_262p01590 at 176.514 kb on + strand, within PGA1_262p01590 at 176.539 kb on - strand, within PGA1_262p01590 at 176.544 kb on - strand, within PGA1_262p01590 at 176.640 kb on - strand, within PGA1_262p01590 at 176.777 kb on - strand, within PGA1_262p01590 at 176.851 kb on + strand, within PGA1_262p01590 at 176.937 kb on - strand at 176.939 kb on - strand at 177.189 kb on + strand, within PGA1_262p01600 at 177.376 kb on + strand, within PGA1_262p01600 at 177.430 kb on - strand, within PGA1_262p01600 at 177.461 kb on - strand, within PGA1_262p01600 at 177.527 kb on - strand, within PGA1_262p01600 at 177.667 kb on + strand at 177.681 kb on + strand at 177.747 kb on + strand at 177.805 kb on + strand, within PGA1_262p01610 at 177.810 kb on + strand, within PGA1_262p01610 at 177.810 kb on + strand, within PGA1_262p01610 at 177.818 kb on - strand, within PGA1_262p01610 at 177.826 kb on + strand, within PGA1_262p01610 at 177.834 kb on - strand, within PGA1_262p01610 at 177.834 kb on - strand, within PGA1_262p01610 at 177.869 kb on + strand, within PGA1_262p01610 at 178.136 kb on - strand, within PGA1_262p01610 at 178.214 kb on + strand, within PGA1_262p01610 at 178.343 kb on + strand, within PGA1_262p01610 at 178.606 kb on + strand, within PGA1_262p01610
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.145 mg/ml remove 176,150 + PGA1_262p01580 0.79 -0.7 176,308 - +1.0 176,309 + -0.4 176,425 + PGA1_262p01590 0.25 -0.3 176,425 + PGA1_262p01590 0.25 -0.6 176,494 - PGA1_262p01590 0.35 +0.1 176,514 + PGA1_262p01590 0.38 -1.1 176,539 - PGA1_262p01590 0.42 -0.7 176,544 - PGA1_262p01590 0.42 -0.7 176,640 - PGA1_262p01590 0.57 +1.0 176,777 - PGA1_262p01590 0.77 +0.6 176,851 + PGA1_262p01590 0.88 -0.0 176,937 - +0.5 176,939 - -0.8 177,189 + PGA1_262p01600 0.36 +1.3 177,376 + PGA1_262p01600 0.63 +0.6 177,430 - PGA1_262p01600 0.71 +1.9 177,461 - PGA1_262p01600 0.75 +0.9 177,527 - PGA1_262p01600 0.85 +1.2 177,667 + -2.9 177,681 + -1.3 177,747 + -1.6 177,805 + PGA1_262p01610 0.14 -0.1 177,810 + PGA1_262p01610 0.14 -1.1 177,810 + PGA1_262p01610 0.14 -2.3 177,818 - PGA1_262p01610 0.15 +0.6 177,826 + PGA1_262p01610 0.16 -0.0 177,834 - PGA1_262p01610 0.16 +0.5 177,834 - PGA1_262p01610 0.16 -1.3 177,869 + PGA1_262p01610 0.19 -0.4 178,136 - PGA1_262p01610 0.41 +0.3 178,214 + PGA1_262p01610 0.47 -1.9 178,343 + PGA1_262p01610 0.57 -0.0 178,606 + PGA1_262p01610 0.78 +1.1
Or see this region's nucleotide sequence