Experiment: m.b. benzoic 0.145 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01240 and PGA1_262p01250 are separated by 74 nucleotides PGA1_262p01250 and PGA1_262p01260 are separated by 203 nucleotides PGA1_262p01260 and PGA1_262p01270 are separated by 37 nucleotides PGA1_262p01270 and PGA1_262p01280 are separated by 2 nucleotides
PGA1_262p01240: PGA1_262p01240 - hydrid cluster protein-associated redox disulfide domain, at 136,032 to 136,259
_262p01240
PGA1_262p01250: PGA1_262p01250 - transcriptional regulator, crp family, at 136,334 to 137,038
_262p01250
PGA1_262p01260: PGA1_262p01260 - copper-containing nitrite reductase NirK, at 137,242 to 138,465
_262p01260
PGA1_262p01270: PGA1_262p01270 - Uncharacterized conserved protein, at 138,503 to 139,261
_262p01270
PGA1_262p01280: PGA1_262p01280 - transcriptional regulator, TetR family, at 139,264 to 139,872
_262p01280
Position (kb) 137
138
139 Strain fitness (log2 ratio) -1
0
1 at 136.298 kb on + strand at 136.304 kb on + strand at 136.304 kb on + strand at 136.317 kb on - strand at 136.364 kb on - strand at 136.582 kb on + strand, within PGA1_262p01250 at 136.610 kb on + strand, within PGA1_262p01250 at 136.814 kb on - strand, within PGA1_262p01250 at 136.950 kb on + strand, within PGA1_262p01250 at 137.313 kb on - strand at 137.830 kb on + strand, within PGA1_262p01260 at 137.979 kb on + strand, within PGA1_262p01260 at 137.987 kb on - strand, within PGA1_262p01260 at 138.061 kb on - strand, within PGA1_262p01260 at 138.344 kb on + strand at 138.383 kb on - strand at 138.827 kb on - strand, within PGA1_262p01270 at 138.827 kb on - strand, within PGA1_262p01270 at 138.850 kb on - strand, within PGA1_262p01270 at 139.092 kb on - strand, within PGA1_262p01270 at 139.151 kb on + strand, within PGA1_262p01270
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.145 mg/ml remove 136,298 + -0.6 136,304 + +1.2 136,304 + +0.8 136,317 - -1.0 136,364 - -0.7 136,582 + PGA1_262p01250 0.35 -0.9 136,610 + PGA1_262p01250 0.39 +0.3 136,814 - PGA1_262p01250 0.68 +0.7 136,950 + PGA1_262p01250 0.87 +1.5 137,313 - +0.3 137,830 + PGA1_262p01260 0.48 +1.1 137,979 + PGA1_262p01260 0.60 +0.8 137,987 - PGA1_262p01260 0.61 +0.3 138,061 - PGA1_262p01260 0.67 -0.2 138,344 + -0.4 138,383 - -0.9 138,827 - PGA1_262p01270 0.43 +0.0 138,827 - PGA1_262p01270 0.43 -0.8 138,850 - PGA1_262p01270 0.46 +1.2 139,092 - PGA1_262p01270 0.78 -1.5 139,151 + PGA1_262p01270 0.85 +0.3
Or see this region's nucleotide sequence