Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c32830

Experiment: m.b. benzoic 0.145 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c32820 and PGA1_c32830 are separated by 64 nucleotidesPGA1_c32830 and PGA1_c32840 are separated by 33 nucleotidesPGA1_c32840 and PGA1_c32850 are separated by 53 nucleotides PGA1_c32820: PGA1_c32820 - peptidase, M16 family, at 3,442,914 to 3,444,338 _c32820 PGA1_c32830: PGA1_c32830 - hypothetical protein, at 3,444,403 to 3,444,600 _c32830 PGA1_c32840: PGA1_c32840 - Protein of unknown function (DUF3035)., at 3,444,634 to 3,445,149 _c32840 PGA1_c32850: PGA1_c32850 - putative lipoprotein signal peptidase, at 3,445,203 to 3,445,685 _c32850 Position (kb) 3444 3445Strain fitness (log2 ratio) -2 -1 0 1at 3443.404 kb on - strand, within PGA1_c32820at 3443.458 kb on - strand, within PGA1_c32820at 3443.561 kb on + strand, within PGA1_c32820at 3443.584 kb on - strand, within PGA1_c32820at 3443.715 kb on + strand, within PGA1_c32820at 3443.749 kb on + strand, within PGA1_c32820at 3443.749 kb on + strand, within PGA1_c32820at 3443.749 kb on + strand, within PGA1_c32820at 3443.757 kb on - strand, within PGA1_c32820at 3443.757 kb on - strand, within PGA1_c32820at 3443.798 kb on + strand, within PGA1_c32820at 3443.798 kb on + strand, within PGA1_c32820at 3443.806 kb on - strand, within PGA1_c32820at 3443.806 kb on - strand, within PGA1_c32820at 3443.806 kb on - strand, within PGA1_c32820at 3443.806 kb on - strand, within PGA1_c32820at 3443.838 kb on - strand, within PGA1_c32820at 3443.954 kb on - strand, within PGA1_c32820at 3443.961 kb on - strand, within PGA1_c32820at 3443.986 kb on + strand, within PGA1_c32820at 3444.019 kb on + strand, within PGA1_c32820at 3444.019 kb on + strand, within PGA1_c32820at 3444.019 kb on + strand, within PGA1_c32820at 3444.027 kb on - strand, within PGA1_c32820at 3444.057 kb on + strand, within PGA1_c32820at 3444.060 kb on - strand, within PGA1_c32820at 3444.065 kb on - strand, within PGA1_c32820at 3444.093 kb on + strand, within PGA1_c32820at 3444.108 kb on - strand, within PGA1_c32820at 3444.169 kb on + strand, within PGA1_c32820at 3444.200 kb on + strandat 3444.208 kb on - strandat 3444.219 kb on - strandat 3444.261 kb on + strandat 3444.320 kb on + strandat 3444.388 kb on + strandat 3444.451 kb on - strand, within PGA1_c32830at 3444.458 kb on - strand, within PGA1_c32830at 3444.458 kb on - strand, within PGA1_c32830at 3444.462 kb on - strand, within PGA1_c32830at 3444.557 kb on - strand, within PGA1_c32830at 3444.569 kb on - strand, within PGA1_c32830at 3444.616 kb on + strandat 3444.616 kb on + strandat 3444.657 kb on - strandat 3444.657 kb on - strandat 3444.751 kb on - strand, within PGA1_c32840at 3444.752 kb on + strand, within PGA1_c32840at 3444.760 kb on - strand, within PGA1_c32840at 3444.772 kb on + strand, within PGA1_c32840at 3444.858 kb on + strand, within PGA1_c32840at 3444.859 kb on - strand, within PGA1_c32840at 3444.898 kb on - strand, within PGA1_c32840at 3444.940 kb on - strand, within PGA1_c32840at 3444.952 kb on - strand, within PGA1_c32840at 3444.974 kb on + strand, within PGA1_c32840at 3444.974 kb on + strand, within PGA1_c32840at 3444.982 kb on - strand, within PGA1_c32840at 3445.001 kb on - strand, within PGA1_c32840at 3445.021 kb on - strand, within PGA1_c32840at 3445.062 kb on - strand, within PGA1_c32840at 3445.125 kb on - strandat 3445.153 kb on + strandat 3445.187 kb on + strandat 3445.195 kb on - strandat 3445.195 kb on - strandat 3445.195 kb on - strandat 3445.195 kb on - strandat 3445.208 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.145 mg/ml
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3,443,404 - PGA1_c32820 0.34 -1.5
3,443,458 - PGA1_c32820 0.38 -2.2
3,443,561 + PGA1_c32820 0.45 -0.7
3,443,584 - PGA1_c32820 0.47 -0.3
3,443,715 + PGA1_c32820 0.56 +0.7
3,443,749 + PGA1_c32820 0.59 -1.4
3,443,749 + PGA1_c32820 0.59 +0.1
3,443,749 + PGA1_c32820 0.59 -1.6
3,443,757 - PGA1_c32820 0.59 -2.3
3,443,757 - PGA1_c32820 0.59 -0.7
3,443,798 + PGA1_c32820 0.62 -2.1
3,443,798 + PGA1_c32820 0.62 -0.8
3,443,806 - PGA1_c32820 0.63 -1.5
3,443,806 - PGA1_c32820 0.63 -2.1
3,443,806 - PGA1_c32820 0.63 -1.3
3,443,806 - PGA1_c32820 0.63 -1.6
3,443,838 - PGA1_c32820 0.65 -2.5
3,443,954 - PGA1_c32820 0.73 -0.8
3,443,961 - PGA1_c32820 0.73 -0.4
3,443,986 + PGA1_c32820 0.75 +0.5
3,444,019 + PGA1_c32820 0.78 -0.2
3,444,019 + PGA1_c32820 0.78 -0.3
3,444,019 + PGA1_c32820 0.78 -0.3
3,444,027 - PGA1_c32820 0.78 -1.1
3,444,057 + PGA1_c32820 0.80 -0.5
3,444,060 - PGA1_c32820 0.80 -1.2
3,444,065 - PGA1_c32820 0.81 +0.7
3,444,093 + PGA1_c32820 0.83 -2.3
3,444,108 - PGA1_c32820 0.84 -1.8
3,444,169 + PGA1_c32820 0.88 +0.7
3,444,200 + -1.1
3,444,208 - -1.6
3,444,219 - -1.7
3,444,261 + -1.3
3,444,320 + -1.3
3,444,388 + -0.4
3,444,451 - PGA1_c32830 0.24 +0.6
3,444,458 - PGA1_c32830 0.28 +0.2
3,444,458 - PGA1_c32830 0.28 +0.7
3,444,462 - PGA1_c32830 0.30 +1.5
3,444,557 - PGA1_c32830 0.78 -0.0
3,444,569 - PGA1_c32830 0.84 +0.2
3,444,616 + -0.5
3,444,616 + -0.7
3,444,657 - -0.8
3,444,657 - -0.9
3,444,751 - PGA1_c32840 0.23 +0.2
3,444,752 + PGA1_c32840 0.23 +1.3
3,444,760 - PGA1_c32840 0.24 -1.5
3,444,772 + PGA1_c32840 0.27 -1.0
3,444,858 + PGA1_c32840 0.43 +0.0
3,444,859 - PGA1_c32840 0.44 +1.3
3,444,898 - PGA1_c32840 0.51 +0.4
3,444,940 - PGA1_c32840 0.59 +0.5
3,444,952 - PGA1_c32840 0.62 -0.0
3,444,974 + PGA1_c32840 0.66 -0.7
3,444,974 + PGA1_c32840 0.66 -0.5
3,444,982 - PGA1_c32840 0.67 -0.7
3,445,001 - PGA1_c32840 0.71 +0.4
3,445,021 - PGA1_c32840 0.75 -0.4
3,445,062 - PGA1_c32840 0.83 -0.8
3,445,125 - +0.5
3,445,153 + +0.7
3,445,187 + +0.7
3,445,195 - -0.4
3,445,195 - -1.4
3,445,195 - -0.6
3,445,195 - -0.7
3,445,208 - +0.5

Or see this region's nucleotide sequence