Experiment: m.b. benzoic 0.145 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c31200 and PGA1_c31210 overlap by 4 nucleotides PGA1_c31210 and PGA1_c31220 overlap by 1 nucleotides PGA1_c31220 and PGA1_c31230 are separated by 6 nucleotides PGA1_c31230 and PGA1_c31240 are separated by 85 nucleotides
PGA1_c31200: PGA1_c31200 - putative acetyltransferase, at 3,256,831 to 3,257,373
_c31200
PGA1_c31210: PGA1_c31210 - Protein of unknown function (DUF2948)., at 3,257,370 to 3,257,846
_c31210
PGA1_c31220: PGA1_c31220 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA, at 3,257,846 to 3,259,117
_c31220
PGA1_c31230: PGA1_c31230 - hypothetical protein, at 3,259,124 to 3,259,303
_c31230
PGA1_c31240: PGA1_c31240 - tRNA-Thr, at 3,259,389 to 3,259,463
_c31240
Position (kb)
3257
3258
3259
3260 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3256.880 kb on + strand at 3256.880 kb on + strand at 3256.880 kb on + strand at 3256.888 kb on - strand, within PGA1_c31200 at 3256.927 kb on + strand, within PGA1_c31200 at 3256.940 kb on + strand, within PGA1_c31200 at 3256.940 kb on - strand, within PGA1_c31200 at 3256.940 kb on - strand, within PGA1_c31200 at 3256.948 kb on - strand, within PGA1_c31200 at 3256.953 kb on + strand, within PGA1_c31200 at 3256.986 kb on + strand, within PGA1_c31200 at 3257.031 kb on + strand, within PGA1_c31200 at 3257.031 kb on + strand, within PGA1_c31200 at 3257.039 kb on - strand, within PGA1_c31200 at 3257.039 kb on - strand, within PGA1_c31200 at 3257.039 kb on - strand, within PGA1_c31200 at 3257.039 kb on - strand, within PGA1_c31200 at 3257.039 kb on - strand, within PGA1_c31200 at 3257.039 kb on - strand, within PGA1_c31200 at 3257.039 kb on - strand, within PGA1_c31200 at 3257.057 kb on + strand, within PGA1_c31200 at 3257.057 kb on + strand, within PGA1_c31200 at 3257.057 kb on + strand, within PGA1_c31200 at 3257.057 kb on + strand, within PGA1_c31200 at 3257.057 kb on + strand, within PGA1_c31200 at 3257.057 kb on + strand, within PGA1_c31200 at 3257.057 kb on + strand, within PGA1_c31200 at 3257.057 kb on + strand, within PGA1_c31200 at 3257.065 kb on - strand, within PGA1_c31200 at 3257.065 kb on - strand, within PGA1_c31200 at 3257.065 kb on - strand, within PGA1_c31200 at 3257.078 kb on + strand, within PGA1_c31200 at 3257.090 kb on + strand, within PGA1_c31200 at 3257.130 kb on + strand, within PGA1_c31200 at 3257.148 kb on - strand, within PGA1_c31200 at 3257.156 kb on + strand, within PGA1_c31200 at 3257.164 kb on - strand, within PGA1_c31200 at 3257.175 kb on + strand, within PGA1_c31200 at 3257.198 kb on + strand, within PGA1_c31200 at 3257.222 kb on - strand, within PGA1_c31200 at 3257.242 kb on - strand, within PGA1_c31200 at 3257.271 kb on + strand, within PGA1_c31200 at 3257.279 kb on - strand, within PGA1_c31200 at 3257.313 kb on - strand, within PGA1_c31200 at 3257.313 kb on - strand, within PGA1_c31200 at 3257.432 kb on + strand, within PGA1_c31210 at 3257.484 kb on + strand, within PGA1_c31210 at 3257.519 kb on + strand, within PGA1_c31210 at 3257.519 kb on + strand, within PGA1_c31210 at 3257.519 kb on + strand, within PGA1_c31210 at 3257.569 kb on - strand, within PGA1_c31210 at 3257.625 kb on - strand, within PGA1_c31210 at 3257.681 kb on + strand, within PGA1_c31210 at 3257.786 kb on + strand, within PGA1_c31210 at 3257.793 kb on - strand, within PGA1_c31210 at 3257.850 kb on - strand at 3257.870 kb on - strand at 3259.137 kb on - strand at 3259.137 kb on - strand at 3259.137 kb on - strand at 3259.247 kb on - strand, within PGA1_c31230 at 3259.259 kb on + strand, within PGA1_c31230 at 3259.307 kb on - strand at 3259.308 kb on + strand at 3259.313 kb on + strand at 3259.529 kb on + strand at 3259.564 kb on + strand at 3259.573 kb on - strand at 3259.600 kb on - strand at 3259.606 kb on + strand at 3259.611 kb on + strand at 3259.611 kb on + strand at 3259.619 kb on - strand at 3259.619 kb on - strand at 3259.669 kb on + strand at 3259.671 kb on + strand at 3259.679 kb on + strand at 3259.681 kb on - strand at 3259.687 kb on + strand at 3259.690 kb on + strand at 3259.690 kb on + strand at 3259.690 kb on + strand at 3259.690 kb on + strand at 3259.692 kb on + strand at 3259.692 kb on + strand at 3259.697 kb on + strand at 3259.698 kb on - strand at 3259.698 kb on - strand at 3259.698 kb on - strand at 3259.700 kb on - strand at 3259.700 kb on - strand at 3259.701 kb on + strand at 3259.701 kb on + strand at 3259.701 kb on + strand at 3259.709 kb on - strand at 3259.709 kb on - strand at 3259.801 kb on + strand at 3259.801 kb on + strand at 3259.809 kb on + strand at 3259.817 kb on + strand at 3259.817 kb on + strand at 3259.817 kb on + strand at 3259.817 kb on + strand at 3259.818 kb on - strand at 3259.826 kb on + strand at 3259.832 kb on + strand at 3259.832 kb on + strand at 3259.841 kb on - strand at 3259.920 kb on + strand at 3259.946 kb on + strand at 3259.946 kb on + strand at 3259.949 kb on - strand at 3259.949 kb on - strand at 3259.954 kb on - strand at 3259.960 kb on - strand at 3259.967 kb on + strand at 3259.968 kb on - strand at 3259.975 kb on - strand at 3259.975 kb on - strand at 3259.975 kb on - strand at 3259.975 kb on - strand at 3260.013 kb on - strand at 3260.049 kb on + strand at 3260.049 kb on + strand at 3260.049 kb on + strand at 3260.049 kb on + strand at 3260.057 kb on + strand at 3260.057 kb on - strand at 3260.059 kb on - strand at 3260.064 kb on + strand at 3260.072 kb on - strand at 3260.072 kb on - strand at 3260.072 kb on - strand at 3260.074 kb on + strand at 3260.076 kb on + strand at 3260.076 kb on + strand at 3260.081 kb on + strand at 3260.081 kb on + strand at 3260.081 kb on + strand at 3260.084 kb on - strand at 3260.089 kb on - strand at 3260.089 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.145 mg/ml remove 3,256,880 + -0.0 3,256,880 + -0.9 3,256,880 + -0.5 3,256,888 - PGA1_c31200 0.10 -0.1 3,256,927 + PGA1_c31200 0.18 +0.7 3,256,940 + PGA1_c31200 0.20 -0.6 3,256,940 - PGA1_c31200 0.20 -0.7 3,256,940 - PGA1_c31200 0.20 -1.1 3,256,948 - PGA1_c31200 0.22 +0.2 3,256,953 + PGA1_c31200 0.22 +0.7 3,256,986 + PGA1_c31200 0.29 -0.1 3,257,031 + PGA1_c31200 0.37 -0.3 3,257,031 + PGA1_c31200 0.37 -1.0 3,257,039 - PGA1_c31200 0.38 +1.1 3,257,039 - PGA1_c31200 0.38 +0.7 3,257,039 - PGA1_c31200 0.38 -0.7 3,257,039 - PGA1_c31200 0.38 +0.2 3,257,039 - PGA1_c31200 0.38 -1.0 3,257,039 - PGA1_c31200 0.38 -1.7 3,257,039 - PGA1_c31200 0.38 -0.8 3,257,057 + PGA1_c31200 0.42 -0.3 3,257,057 + PGA1_c31200 0.42 +1.1 3,257,057 + PGA1_c31200 0.42 +0.1 3,257,057 + PGA1_c31200 0.42 +0.7 3,257,057 + PGA1_c31200 0.42 +0.4 3,257,057 + PGA1_c31200 0.42 +2.1 3,257,057 + PGA1_c31200 0.42 +0.5 3,257,057 + PGA1_c31200 0.42 -1.3 3,257,065 - PGA1_c31200 0.43 +0.3 3,257,065 - PGA1_c31200 0.43 -0.1 3,257,065 - PGA1_c31200 0.43 +1.3 3,257,078 + PGA1_c31200 0.45 -0.5 3,257,090 + PGA1_c31200 0.48 +1.2 3,257,130 + PGA1_c31200 0.55 -0.5 3,257,148 - PGA1_c31200 0.58 -0.3 3,257,156 + PGA1_c31200 0.60 -0.0 3,257,164 - PGA1_c31200 0.61 +0.3 3,257,175 + PGA1_c31200 0.63 -0.9 3,257,198 + PGA1_c31200 0.68 -0.8 3,257,222 - PGA1_c31200 0.72 -1.7 3,257,242 - PGA1_c31200 0.76 +1.4 3,257,271 + PGA1_c31200 0.81 +1.2 3,257,279 - PGA1_c31200 0.83 +2.0 3,257,313 - PGA1_c31200 0.89 +0.5 3,257,313 - PGA1_c31200 0.89 -0.3 3,257,432 + PGA1_c31210 0.13 +0.3 3,257,484 + PGA1_c31210 0.24 -0.9 3,257,519 + PGA1_c31210 0.31 +1.1 3,257,519 + PGA1_c31210 0.31 -0.4 3,257,519 + PGA1_c31210 0.31 +0.5 3,257,569 - PGA1_c31210 0.42 +1.7 3,257,625 - PGA1_c31210 0.53 -0.5 3,257,681 + PGA1_c31210 0.65 +0.4 3,257,786 + PGA1_c31210 0.87 +0.1 3,257,793 - PGA1_c31210 0.89 -2.5 3,257,850 - +1.0 3,257,870 - -0.2 3,259,137 - +0.7 3,259,137 - -0.4 3,259,137 - +0.7 3,259,247 - PGA1_c31230 0.68 -0.9 3,259,259 + PGA1_c31230 0.75 -1.2 3,259,307 - -0.3 3,259,308 + +1.3 3,259,313 + -0.8 3,259,529 + -0.7 3,259,564 + -1.9 3,259,573 - +2.7 3,259,600 - +1.7 3,259,606 + -0.1 3,259,611 + -1.4 3,259,611 + +0.2 3,259,619 - -0.5 3,259,619 - -0.6 3,259,669 + -0.3 3,259,671 + -0.8 3,259,679 + +0.3 3,259,681 - -0.5 3,259,687 + +1.3 3,259,690 + +0.9 3,259,690 + +0.3 3,259,690 + +0.9 3,259,690 + +0.4 3,259,692 + -0.2 3,259,692 + -0.3 3,259,697 + -0.7 3,259,698 - +1.2 3,259,698 - +0.2 3,259,698 - -0.9 3,259,700 - +0.4 3,259,700 - -1.1 3,259,701 + +0.8 3,259,701 + +0.6 3,259,701 + -1.3 3,259,709 - -0.3 3,259,709 - -0.0 3,259,801 + -1.3 3,259,801 + -1.2 3,259,809 + +0.4 3,259,817 + +0.6 3,259,817 + -0.1 3,259,817 + -0.1 3,259,817 + -0.2 3,259,818 - +0.4 3,259,826 + -1.3 3,259,832 + -0.1 3,259,832 + +0.1 3,259,841 - -0.0 3,259,920 + -1.1 3,259,946 + +1.7 3,259,946 + -0.1 3,259,949 - +0.4 3,259,949 - +0.0 3,259,954 - -0.7 3,259,960 - -1.3 3,259,967 + -0.0 3,259,968 - +1.2 3,259,975 - -0.8 3,259,975 - +0.8 3,259,975 - -0.9 3,259,975 - +0.7 3,260,013 - +1.1 3,260,049 + -0.3 3,260,049 + +0.7 3,260,049 + -0.1 3,260,049 + +0.1 3,260,057 + +0.3 3,260,057 - +0.5 3,260,059 - +1.0 3,260,064 + -0.0 3,260,072 - -0.3 3,260,072 - +0.1 3,260,072 - +0.0 3,260,074 + +1.5 3,260,076 + -0.8 3,260,076 + -0.9 3,260,081 + -0.4 3,260,081 + +1.4 3,260,081 + -1.1 3,260,084 - +0.0 3,260,089 - +0.3 3,260,089 - +0.8
Or see this region's nucleotide sequence