Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c24790

Experiment: m.b. benzoic 0.145 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c24780 and PGA1_c24790 are separated by 5 nucleotidesPGA1_c24790 and PGA1_c24800 are separated by 186 nucleotides PGA1_c24780: PGA1_c24780 - thioredoxin reductase TrxB, at 2,583,474 to 2,584,415 _c24780 PGA1_c24790: PGA1_c24790 - hypothetical protein, at 2,584,421 to 2,584,756 _c24790 PGA1_c24800: PGA1_c24800 - putative bifunctional SAT/APS kinase, at 2,584,943 to 2,587,018 _c24800 Position (kb) 2584 2585Strain fitness (log2 ratio) -1 0 1 2at 2584.406 kb on + strandat 2584.414 kb on - strandat 2584.516 kb on - strand, within PGA1_c24790at 2584.571 kb on - strand, within PGA1_c24790at 2584.662 kb on - strand, within PGA1_c24790at 2584.682 kb on + strand, within PGA1_c24790at 2584.750 kb on + strandat 2584.750 kb on + strandat 2584.758 kb on - strandat 2584.758 kb on - strandat 2584.952 kb on + strandat 2584.952 kb on + strandat 2584.964 kb on - strandat 2585.069 kb on - strandat 2585.094 kb on - strandat 2585.153 kb on + strand, within PGA1_c24800at 2585.257 kb on + strand, within PGA1_c24800at 2585.397 kb on + strand, within PGA1_c24800at 2585.540 kb on + strand, within PGA1_c24800

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.145 mg/ml
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2,584,406 + +1.4
2,584,414 - -0.4
2,584,516 - PGA1_c24790 0.28 -0.4
2,584,571 - PGA1_c24790 0.45 +0.4
2,584,662 - PGA1_c24790 0.72 +2.0
2,584,682 + PGA1_c24790 0.78 +0.6
2,584,750 + +0.2
2,584,750 + -0.3
2,584,758 - +0.0
2,584,758 - -0.3
2,584,952 + +0.9
2,584,952 + -0.2
2,584,964 - +0.6
2,585,069 - +0.1
2,585,094 - -0.9
2,585,153 + PGA1_c24800 0.10 -0.2
2,585,257 + PGA1_c24800 0.15 -0.7
2,585,397 + PGA1_c24800 0.22 -0.4
2,585,540 + PGA1_c24800 0.29 -0.4

Or see this region's nucleotide sequence